SMTL ID : 4nuq.1

Crystal structure of mouse N-cadherin EC1-2 W2F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.11, D.67, E.69, D.103 Ligands: CA.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.11, A:D.67, A:E.69, H2O.1, H2O.2 CA.2: 8 residues within 4Å: Chain A: E.11, E.69, D.100, M.101, D.103, N.104, D.136 Ligands: CA.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.11, A:E.69, A:D.100, A:M.101, A:D.136 CA.3: 6 residues within 4Å: Chain A: N.102, N.104, D.134, D.136, N.142, D.194 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.104, A:D.134, A:D.134, A:N.142, A:D.194 CA.4: 5 residues within 4Å: Chain B: E.11, D.67, E.69, D.103 Ligands: CA.5 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.11, B:D.67, B:E.69, H2O.7, H2O.8 CA.5: 8 residues within 4Å: Chain B: E.11, E.69, D.100, M.101, D.103, N.104, D.136 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.11, B:E.69, B:D.100, B:M.101, B:D.136 CA.6: 6 residues within 4Å: Chain B: N.102, N.104, D.134, D.136, N.142, D.194 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.104, B:D.134, B:D.134, B:N.142, B:D.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vendome, J. et al., Structural and energetic determinants of adhesive binding specificity in type I cadherins. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-09-24

Peptides

Cadherin-2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Cadherin-2