SMTL ID : 4nwg.1 (1 other biounit)

Crystal structure of the tyrosine phosphatase SHP-2 with E139D mutation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: P.312, K.325, Y.327, I.474, D.477 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.325, A:Y.327, A:Y.327 EDO.2: 6 residues within 4Å: Chain A: I.305, T.330, Q.331, C.333, T.337, F.341 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.276, A:T.330, A:Q.331, A:Q.331 Water bridges: A:N.306, A:C.333 EDO.3: 2 residues within 4Å: Chain A: I.478, K.482 No protein-ligand interaction detected (PLIP) EDO.4: 10 residues within 4Å: Chain A: T.73, A.75, E.76, E.258, L.261, L.262, F.285, R.498, S.502, G.503 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.73, A:R.498, A:G.503 EDO.5: 5 residues within 4Å: Chain A: L.436, D.437, E.440, Y.521, T.524 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.524 Water bridges: A:T.524 EDO.6: 3 residues within 4Å: Chain A: Q.257, K.492, Q.495 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.257 Water bridges: A:Q.495 EDO.7: 6 residues within 4Å: Chain A: E.69, K.70, Y.279, K.280, N.281, I.282 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.70, A:K.70, A:K.70, A:N.281, A:N.281, A:I.282

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.8: 7 residues within 4Å: Chain A: K.324, K.325, S.326, Q.446, E.447, I.449, A.452 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.326, A:Q.446, A:E.447

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qiu, W. et al., Crystal structure of the tyrosine phosphatase SHP-2 with E139D mutation. To be Published

Release Date

2014-12-10

Peptides

Tyrosine-protein phosphatase non-receptor type 11: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 11

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