SMTL ID : 4nwq.1

Computationally Designed Two-Component Self-Assembling Tetrahedral Cage, T33-21, Crystallized in Space Group F4132

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-12-12-mer

Ligands

132 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 11 residues within 4Å: Chain A: E.29, R.124, K.128 Chain K: E.29, R.124, K.128 Chain O: E.29, R.124, K.128 Ligands: SO4.56, SO4.78 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: T.131, R.134 Chain K: S.25 Ligand excluded by PLIP SO4.3: 2 residues within 4Å: Chain A: H.46, K.53 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.5: 5 residues within 4Å: Chain A: Y.47 Chain K: Y.47 Chain O: Y.47 Ligands: SO4.60, SO4.82 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.17, SO4.28 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: D.73, I.74, R.77 Chain O: R.134 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: R.51 Chain D: S.17, G.19 Ligand excluded by PLIP SO4.10: 8 residues within 4Å: Chain B: P.2, H.3, D.39, K.41, Y.114, K.116 Chain F: Q.101, S.103 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.22, SO4.33 Ligand excluded by PLIP SO4.12: 11 residues within 4Å: Chain C: E.29, R.124, K.128 Chain M: E.29, R.124, K.128 Chain W: E.29, R.124, K.128 Ligands: SO4.67, SO4.122 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain C: T.131, R.134 Chain M: S.25 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain C: H.46, K.53 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain C: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain C: Y.47 Chain M: Y.47 Chain W: Y.47 Ligands: SO4.71, SO4.126 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.6, SO4.28 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain D: D.73, I.74, R.77 Chain W: R.134 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain D: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain D: R.51 Chain F: S.17, G.19 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain B: Q.101, S.103 Chain D: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.11, SO4.33 Ligand excluded by PLIP SO4.23: 11 residues within 4Å: Chain E: E.29, R.124, K.128 Chain G: E.29, R.124, K.128 Chain U: E.29, R.124, K.128 Ligands: SO4.34, SO4.111 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain E: T.131, R.134 Chain U: S.25 Ligand excluded by PLIP SO4.25: 2 residues within 4Å: Chain E: H.46, K.53 Ligand excluded by PLIP SO4.26: 4 residues within 4Å: Chain E: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain E: Y.47 Chain G: Y.47 Chain U: Y.47 Ligands: SO4.38, SO4.115 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.6, SO4.17 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain F: D.73, I.74, R.77 Chain G: R.134 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain F: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain B: S.17, G.19 Chain F: R.51 Ligand excluded by PLIP SO4.32: 8 residues within 4Å: Chain D: Q.101, S.103 Chain F: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain B: R.107 Chain D: R.107 Chain F: R.107 Ligands: SO4.11, SO4.22 Ligand excluded by PLIP SO4.34: 11 residues within 4Å: Chain E: E.29, R.124, K.128 Chain G: E.29, R.124, K.128 Chain U: E.29, R.124, K.128 Ligands: SO4.23, SO4.111 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain E: S.25 Chain G: T.131, R.134 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain G: H.46, K.53 Ligand excluded by PLIP SO4.37: 4 residues within 4Å: Chain G: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain E: Y.47 Chain G: Y.47 Chain U: Y.47 Ligands: SO4.27, SO4.115 Ligand excluded by PLIP SO4.39: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.50, SO4.61 Ligand excluded by PLIP SO4.40: 4 residues within 4Å: Chain H: D.73, I.74, R.77 Chain U: R.134 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain H: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.42: 3 residues within 4Å: Chain H: R.51 Chain J: S.17, G.19 Ligand excluded by PLIP SO4.43: 8 residues within 4Å: Chain H: P.2, H.3, D.39, K.41, Y.114, K.116 Chain L: Q.101, S.103 Ligand excluded by PLIP SO4.44: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.55, SO4.66 Ligand excluded by PLIP SO4.45: 11 residues within 4Å: Chain I: E.29, R.124, K.128 Chain Q: E.29, R.124, K.128 Chain S: E.29, R.124, K.128 Ligands: SO4.89, SO4.100 Ligand excluded by PLIP SO4.46: 3 residues within 4Å: Chain I: T.131, R.134 Chain S: S.25 Ligand excluded by PLIP SO4.47: 2 residues within 4Å: Chain I: H.46, K.53 Ligand excluded by PLIP SO4.48: 4 residues within 4Å: Chain I: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.49: 5 residues within 4Å: Chain I: Y.47 Chain Q: Y.47 Chain S: Y.47 Ligands: SO4.93, SO4.104 Ligand excluded by PLIP SO4.50: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.39, SO4.61 Ligand excluded by PLIP SO4.51: 4 residues within 4Å: Chain J: D.73, I.74, R.77 Chain Q: R.134 Ligand excluded by PLIP SO4.52: 5 residues within 4Å: Chain J: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.53: 3 residues within 4Å: Chain J: R.51 Chain L: S.17, G.19 Ligand excluded by PLIP SO4.54: 8 residues within 4Å: Chain H: Q.101, S.103 Chain J: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.55: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.44, SO4.66 Ligand excluded by PLIP SO4.56: 11 residues within 4Å: Chain A: E.29, R.124, K.128 Chain K: E.29, R.124, K.128 Chain O: E.29, R.124, K.128 Ligands: SO4.1, SO4.78 Ligand excluded by PLIP SO4.57: 3 residues within 4Å: Chain K: T.131, R.134 Chain O: S.25 Ligand excluded by PLIP SO4.58: 2 residues within 4Å: Chain K: H.46, K.53 Ligand excluded by PLIP SO4.59: 4 residues within 4Å: Chain K: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain A: Y.47 Chain K: Y.47 Chain O: Y.47 Ligands: SO4.5, SO4.82 Ligand excluded by PLIP SO4.61: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.39, SO4.50 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain A: R.134 Chain L: D.73, I.74, R.77 Ligand excluded by PLIP SO4.63: 5 residues within 4Å: Chain L: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.64: 3 residues within 4Å: Chain H: S.17, G.19 Chain L: R.51 Ligand excluded by PLIP SO4.65: 8 residues within 4Å: Chain J: Q.101, S.103 Chain L: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.66: 5 residues within 4Å: Chain H: R.107 Chain J: R.107 Chain L: R.107 Ligands: SO4.44, SO4.55 Ligand excluded by PLIP SO4.67: 11 residues within 4Å: Chain C: E.29, R.124, K.128 Chain M: E.29, R.124, K.128 Chain W: E.29, R.124, K.128 Ligands: SO4.12, SO4.122 Ligand excluded by PLIP SO4.68: 3 residues within 4Å: Chain M: T.131, R.134 Chain W: S.25 Ligand excluded by PLIP SO4.69: 2 residues within 4Å: Chain M: H.46, K.53 Ligand excluded by PLIP SO4.70: 4 residues within 4Å: Chain M: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.71: 5 residues within 4Å: Chain C: Y.47 Chain M: Y.47 Chain W: Y.47 Ligands: SO4.16, SO4.126 Ligand excluded by PLIP SO4.72: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.83, SO4.94 Ligand excluded by PLIP SO4.73: 4 residues within 4Å: Chain C: R.134 Chain N: D.73, I.74, R.77 Ligand excluded by PLIP SO4.74: 5 residues within 4Å: Chain N: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.75: 3 residues within 4Å: Chain N: R.51 Chain P: S.17, G.19 Ligand excluded by PLIP SO4.76: 8 residues within 4Å: Chain N: P.2, H.3, D.39, K.41, Y.114, K.116 Chain R: Q.101, S.103 Ligand excluded by PLIP SO4.77: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.88, SO4.99 Ligand excluded by PLIP SO4.78: 11 residues within 4Å: Chain A: E.29, R.124, K.128 Chain K: E.29, R.124, K.128 Chain O: E.29, R.124, K.128 Ligands: SO4.1, SO4.56 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain A: S.25 Chain O: T.131, R.134 Ligand excluded by PLIP SO4.80: 2 residues within 4Å: Chain O: H.46, K.53 Ligand excluded by PLIP SO4.81: 4 residues within 4Å: Chain O: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.82: 5 residues within 4Å: Chain A: Y.47 Chain K: Y.47 Chain O: Y.47 Ligands: SO4.5, SO4.60 Ligand excluded by PLIP SO4.83: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.72, SO4.94 Ligand excluded by PLIP SO4.84: 4 residues within 4Å: Chain K: R.134 Chain P: D.73, I.74, R.77 Ligand excluded by PLIP SO4.85: 5 residues within 4Å: Chain P: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.86: 3 residues within 4Å: Chain P: R.51 Chain R: S.17, G.19 Ligand excluded by PLIP SO4.87: 8 residues within 4Å: Chain N: Q.101, S.103 Chain P: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.88: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.77, SO4.99 Ligand excluded by PLIP SO4.89: 11 residues within 4Å: Chain I: E.29, R.124, K.128 Chain Q: E.29, R.124, K.128 Chain S: E.29, R.124, K.128 Ligands: SO4.45, SO4.100 Ligand excluded by PLIP SO4.90: 3 residues within 4Å: Chain I: S.25 Chain Q: T.131, R.134 Ligand excluded by PLIP SO4.91: 2 residues within 4Å: Chain Q: H.46, K.53 Ligand excluded by PLIP SO4.92: 4 residues within 4Å: Chain Q: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.93: 5 residues within 4Å: Chain I: Y.47 Chain Q: Y.47 Chain S: Y.47 Ligands: SO4.49, SO4.104 Ligand excluded by PLIP SO4.94: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.72, SO4.83 Ligand excluded by PLIP SO4.95: 4 residues within 4Å: Chain R: D.73, I.74, R.77 Chain S: R.134 Ligand excluded by PLIP SO4.96: 5 residues within 4Å: Chain R: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.97: 3 residues within 4Å: Chain N: S.17, G.19 Chain R: R.51 Ligand excluded by PLIP SO4.98: 8 residues within 4Å: Chain P: Q.101, S.103 Chain R: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain N: R.107 Chain P: R.107 Chain R: R.107 Ligands: SO4.77, SO4.88 Ligand excluded by PLIP SO4.100: 11 residues within 4Å: Chain I: E.29, R.124, K.128 Chain Q: E.29, R.124, K.128 Chain S: E.29, R.124, K.128 Ligands: SO4.45, SO4.89 Ligand excluded by PLIP SO4.101: 3 residues within 4Å: Chain Q: S.25 Chain S: T.131, R.134 Ligand excluded by PLIP SO4.102: 2 residues within 4Å: Chain S: H.46, K.53 Ligand excluded by PLIP SO4.103: 4 residues within 4Å: Chain S: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.104: 5 residues within 4Å: Chain I: Y.47 Chain Q: Y.47 Chain S: Y.47 Ligands: SO4.49, SO4.93 Ligand excluded by PLIP SO4.105: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.116, SO4.127 Ligand excluded by PLIP SO4.106: 4 residues within 4Å: Chain I: R.134 Chain T: D.73, I.74, R.77 Ligand excluded by PLIP SO4.107: 5 residues within 4Å: Chain T: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.108: 3 residues within 4Å: Chain T: R.51 Chain V: S.17, G.19 Ligand excluded by PLIP SO4.109: 8 residues within 4Å: Chain T: P.2, H.3, D.39, K.41, Y.114, K.116 Chain X: Q.101, S.103 Ligand excluded by PLIP SO4.110: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.121, SO4.132 Ligand excluded by PLIP SO4.111: 11 residues within 4Å: Chain E: E.29, R.124, K.128 Chain G: E.29, R.124, K.128 Chain U: E.29, R.124, K.128 Ligands: SO4.23, SO4.34 Ligand excluded by PLIP SO4.112: 3 residues within 4Å: Chain G: S.25 Chain U: T.131, R.134 Ligand excluded by PLIP SO4.113: 2 residues within 4Å: Chain U: H.46, K.53 Ligand excluded by PLIP SO4.114: 4 residues within 4Å: Chain U: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.115: 5 residues within 4Å: Chain E: Y.47 Chain G: Y.47 Chain U: Y.47 Ligands: SO4.27, SO4.38 Ligand excluded by PLIP SO4.116: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.105, SO4.127 Ligand excluded by PLIP SO4.117: 4 residues within 4Å: Chain E: R.134 Chain V: D.73, I.74, R.77 Ligand excluded by PLIP SO4.118: 5 residues within 4Å: Chain V: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.119: 3 residues within 4Å: Chain V: R.51 Chain X: S.17, G.19 Ligand excluded by PLIP SO4.120: 8 residues within 4Å: Chain T: Q.101, S.103 Chain V: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.121: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.110, SO4.132 Ligand excluded by PLIP SO4.122: 11 residues within 4Å: Chain C: E.29, R.124, K.128 Chain M: E.29, R.124, K.128 Chain W: E.29, R.124, K.128 Ligands: SO4.12, SO4.67 Ligand excluded by PLIP SO4.123: 3 residues within 4Å: Chain C: S.25 Chain W: T.131, R.134 Ligand excluded by PLIP SO4.124: 2 residues within 4Å: Chain W: H.46, K.53 Ligand excluded by PLIP SO4.125: 4 residues within 4Å: Chain W: W.86, K.89, L.90, R.93 Ligand excluded by PLIP SO4.126: 5 residues within 4Å: Chain C: Y.47 Chain M: Y.47 Chain W: Y.47 Ligands: SO4.16, SO4.71 Ligand excluded by PLIP SO4.127: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.105, SO4.116 Ligand excluded by PLIP SO4.128: 4 residues within 4Å: Chain M: R.134 Chain X: D.73, I.74, R.77 Ligand excluded by PLIP SO4.129: 5 residues within 4Å: Chain X: Q.34, F.35, L.69, R.72, R.111 Ligand excluded by PLIP SO4.130: 3 residues within 4Å: Chain T: S.17, G.19 Chain X: R.51 Ligand excluded by PLIP SO4.131: 8 residues within 4Å: Chain V: Q.101, S.103 Chain X: P.2, H.3, D.39, K.41, Y.114, K.116 Ligand excluded by PLIP SO4.132: 5 residues within 4Å: Chain T: R.107 Chain V: R.107 Chain X: R.107 Ligands: SO4.110, SO4.121 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

King, N.P. et al., Accurate design of co-assembling multi-component protein nanomaterials. Nature (2014)

Release Date

2014-05-28

Peptides

Putative uncharacterized protein PH0671: ACEGIKMOQSUW
Uncharacterized protein: BDFHJLNPRTVX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

M
A

O
A

Q
A

S
A

U
A

W
A

B
B

D
B

F
B

H
B

J
B

L
B

N
B

P
B

R
B

T
B

V
B

X
B

Putative uncharacterized protein PH0671

Uncharacterized protein

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