SMTL ID : 4nxi.1

Rv2466c Mediates the Activation of TP053 To Kill Replicating and Non-replicating Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: H.44, E.80 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:H.44, H2O.2, H2O.2, H2O.3, H2O.4, H2O.6 MG.3: 2 residues within 4Å: Chain B: H.44, E.80 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:H.44, H2O.9, H2O.9, H2O.9, H2O.12, H2O.14 MG.4: 1 residues within 4Å: Chain B: Q.61 No protein-ligand interaction detected (PLIP) MG.5: 1 residues within 4Å: Chain B: D.131 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.131, H2O.16, H2O.16, H2O.16, H2O.16, H2O.16

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: V.11, N.160, G.161 No protein-ligand interaction detected (PLIP) EDO.6: 6 residues within 4Å: Chain B: I.77, E.80, Q.81, A.136, K.139, S.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.80, B:Q.81, B:S.140 Water bridges: B:K.139 EDO.7: 4 residues within 4Å: Chain B: Q.102, N.104, E.109, Q.113 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Q.102, B:N.104, B:E.109, B:Q.113 Water bridges: B:Q.113 EDO.8: 3 residues within 4Å: Chain B: R.68, D.108, T.129 3 PLIP interactions: 3 interactions with chain B Water bridges: B:R.68, B:R.68, B:D.108 EDO.9: 3 residues within 4Å: Chain B: P.21, W.22, I.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Albesa-Jove, D. et al., Rv2466c mediates the activation of TP053 to kill replicating and non-replicating Mycobacterium tuberculosis. Acs Chem.Biol. (2014)

Release Date

2014-10-22

Peptides

Uncharacterized protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Uncharacterized protein