- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 29 x SO4: SULFATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
GOL.10: 11 residues within 4Å:- Chain A: W.32, D.66, H.126, K.195, S.231, P.232, R.251, D.255, D.286, M.287
- Ligands: GOL.11
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:H.126, A:K.195, A:S.231, A:R.251, A:R.251, A:D.286
- Water bridges: A:F.256
GOL.11: 5 residues within 4Å:- Chain A: W.161, P.232, D.254, D.255
- Ligands: GOL.10
No protein-ligand interaction detected (PLIP)GOL.12: 2 residues within 4Å:- Chain A: K.217, R.221
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.217, A:R.221
GOL.13: 3 residues within 4Å:- Chain A: H.137, R.150
- Chain C: P.84
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.137, A:R.150, A:R.150
GOL.22: 9 residues within 4Å:- Chain B: W.32, D.66, H.126, K.195, P.232, R.251, D.255, M.287
- Ligands: GOL.23
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.66, B:K.195, B:K.195, B:R.251, B:R.251
GOL.23: 4 residues within 4Å:- Chain B: P.232, D.254, D.255
- Ligands: GOL.22
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.255
GOL.24: 2 residues within 4Å:- Chain B: K.217, R.221
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:K.217, B:K.217, B:R.221, B:R.221
GOL.25: 4 residues within 4Å:- Chain B: Y.205, T.207, P.236, H.239
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:T.207, B:T.207, B:T.207
GOL.32: 10 residues within 4Å:- Chain C: W.32, D.66, H.126, K.195, S.231, P.232, R.251, D.255, M.287
- Ligands: GOL.33
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:D.66, C:K.195, C:K.195, C:R.251, C:R.251, C:D.255
GOL.33: 6 residues within 4Å:- Chain C: W.161, K.203, P.232, D.254, D.255
- Ligands: GOL.32
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.254
GOL.42: 5 residues within 4Å:- Chain D: W.161, P.232, D.254, D.255
- Ligands: GOL.43
No protein-ligand interaction detected (PLIP)GOL.43: 10 residues within 4Å:- Chain D: W.32, D.66, I.67, Y.79, H.126, K.195, P.232, R.251, D.255
- Ligands: GOL.42
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:Y.79, D:Y.79, D:K.195, D:K.195, D:R.251, D:D.255
GOL.44: 5 residues within 4Å:- Chain D: Y.205, G.206, T.207, P.236, H.239
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:T.207
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.14: 8 residues within 4Å:- Chain A: D.154, H.170, R.171, T.207, H.208, T.209, E.210, E.211
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:E.210
- Hydrogen bonds: A:T.209, A:E.210, A:E.211, A:E.211, A:E.211
- Water bridges: A:D.154, A:D.154, A:D.154, A:S.157, A:H.170, A:R.171, A:H.208
- Salt bridges: A:H.170, A:R.171, A:H.208
CIT.34: 10 residues within 4Å:- Chain C: R.129, D.154, D.169, H.170, R.171, T.207, H.208, T.209, E.210, E.211
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:E.210, C:E.210
- Hydrogen bonds: C:R.129, C:T.207, C:T.209, C:E.210, C:E.211, C:E.211
- Water bridges: C:S.157, C:S.157, C:H.170
- Salt bridges: C:H.170, C:R.171, C:H.208
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansky, S. et al., Structure-specificity relationships in Abp, a GH27 beta-L-arabinopyranosidase from Geobacillus stearothermophilus T6. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-03
- Peptides
- Abp, a GH27 beta-L-arabinopyranosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.30 Å
- Oligo State
- homo-tetramer
- Ligands
- 29 x SO4: SULFATE ION(Non-functional Binders)
- 13 x GOL: GLYCEROL(Non-functional Binders)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lansky, S. et al., Structure-specificity relationships in Abp, a GH27 beta-L-arabinopyranosidase from Geobacillus stearothermophilus T6. Acta Crystallogr.,Sect.D (2014)
- Release Date
- 2014-12-03
- Peptides
- Abp, a GH27 beta-L-arabinopyranosidase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H