SMTL ID : 4nxr.1

Crystal Structure of T-cell Lymphoma Invasion and Metastasis-1 PDZ Domain Quadruple Mutant (QM) in Complex With Neurexin-1 Peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ASN- LYS- ASP- LYS- GLU- TYR- TYR- VAL: Neurexin-2-beta Peptide(Non-covalent)

ASN-LYS-ASP-LYS-GLU-TYR-TYR-VAL.1: 17 residues within 4Å: Chain A: T.21, Y.22, G.23, F.24, S.25, L.26, S.27, S.28, V.29, E.30, R.35, N.40, S.41, S.72, M.75, F.79 Ligands: ANS.3 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.24, A:L.26, A:F.79 Hydrogen bonds: A:Y.22, A:G.23, A:F.24, A:F.24, A:S.25, A:L.26, A:L.26, A:S.27, A:S.27, A:S.28, A:S.28, A:S.28, A:E.30, A:E.30, A:N.40, A:S.41, A:S.41 Salt bridges: A:R.35

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 2 residues within 4Å: Chain A: A.2, Y.91 No protein-ligand interaction detected (PLIP)

1 x ANS: 5-(DIMETHYLAMINO)-1-NAPHTHALENESULFONIC ACID(DANSYL ACID)(Non-covalent)

ANS.3: 6 residues within 4Å: Chain A: S.27, E.31, Y.38, N.40 Ligands: ASN-LYS-ASP-LYS-GLU-TYR-TYR-VAL.1, ASN-LYS-ASP-LYS-GLU-TYR-TYR-VAL.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.31, A:Y.38

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, X. et al., Distinct Roles for Conformational Dynamics in Protein-Ligand Interactions. Structure (2016)

Release Date

2015-05-13

Peptides

T-lymphoma invasion and metastasis-inducing protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

T-lymphoma invasion and metastasis-inducing protein 1

Related Entries With Identical Sequence