SMTL ID : 4ny4.1 (1 other biounit)

Crystal structure of CYP3A4 in complex with an inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 25 residues within 4Å: Chain A: R.82, I.95, S.96, W.103, R.107, F.114, F.279, A.282, T.286, V.290, I.346, A.347, L.350, R.352, P.411, F.412, G.413, S.414, R.417, N.418, C.419, I.420, A.425, M.429 Ligands: 2QH.2 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:I.95, A:F.114, A:F.279, A:A.282, A:V.290, A:I.346, A:I.346, A:A.347, A:L.350, A:F.412, A:F.412, A:I.420 Hydrogen bonds: A:S.414 Salt bridges: A:R.82, A:R.82, A:R.107, A:R.352, A:R.417 Metal complexes: A:C.419

1 x 2QH: (8R)-3,3-difluoro-8-[4-fluoro-3-(pyridin-3-yl)phenyl]-8-(4-methoxy-3-methylphenyl)-2,3,4,8-tetrahydroimidazo[1,5-a]pyrimidin-6-amine(Non-covalent)

2QH.2: 14 residues within 4Å: Chain A: R.82, R.83, F.85, S.96, R.189, F.190, F.192, F.218, I.278, F.281, A.282, T.286, A.347 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.190, A:T.286 Hydrogen bonds: A:R.82, A:S.96, A:R.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Branden, G. et al., Structure-based ligand design to overcome CYP inhibition in drug discovery projects. Drug Discov Today (2014)

Release Date

2014-08-13

Peptides

Cytochrome P450 3A4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450 3A4

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