SMTL ID : 4ny9.2 (1 other biounit)

Crystal Structure Of the Human PXR-LBD In Complex With N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x 2Q4: N-{(2R)-1-[(4S)-4-(4-chlorophenyl)-4-hydroxy-3,3-dimethylpiperidin-1-yl]-3-methyl-1-oxobutan-2-yl}-3-hydroxy-3-methylbutanamide(Non-covalent)

2Q4.1: 17 residues within 4Å: Chain A: L.65, L.68, V.70, L.99, M.102, A.103, M.105, S.106, F.140, Q.144, F.147, W.158, Y.165, M.182, L.183, H.266, M.284 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.65, A:M.102, A:F.147, A:W.158, A:W.158, A:W.158, A:Y.165, A:Y.165, A:L.183 Hydrogen bonds: A:Q.144, A:H.266 2Q4.3: 17 residues within 4Å: Chain B: L.65, L.68, V.70, L.99, M.102, A.103, M.105, S.106, F.140, Q.144, F.147, W.158, Y.165, M.182, L.183, H.266, M.284 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:L.65, B:M.102, B:F.147, B:W.158, B:W.158, B:W.158, B:Y.165, B:Y.165, B:L.183 Hydrogen bonds: B:Q.144, B:H.266

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: T.20, F.21, D.22, Y.108, M.109, G.112, R.146 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.22, A:Y.108, A:Y.108, A:R.146 GOL.4: 7 residues within 4Å: Chain B: T.20, F.21, D.22, Y.108, M.109, G.112, R.146 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.22, B:Y.108, B:R.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Santella, J.B. et al., Discovery of the CCR1 antagonist, BMS-817399, for the treatment of rheumatoid arthritis. J.Med.Chem. (2014)

Release Date

2014-08-27

Peptides

Nuclear receptor subfamily 1 group I member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nuclear receptor subfamily 1 group I member 2

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