SMTL ID : 4nyz.1

The EMCV 3Dpol structure with altered motif A conformation at 2.15A resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x GLN: GLUTAMINE(Non-covalent)

GLN.1: 8 residues within 4Å: Chain A: Y.236, N.238, S.241, T.242, H.243, G.290, L.291, D.333 9 PLIP interactions: 7 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:Y.236, A:N.238, A:H.243, A:L.291, A:L.291 Water bridges: A:Y.236, A:K.358, Q.1, Q.1

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: A.36, K.159, E.161, R.163, T.173, R.174 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:K.159, A:E.161

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: F.33, K.381, A.399, M.403 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.381 Water bridges: A:L.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vives-Adrian, L. et al., The crystal structure of a cardiovirus RNA-dependent RNA polymerase reveals an unusual conformation of the polymerase active site. J.Virol. (2014)

Release Date

2014-03-19

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein