SMTL ID : 4nz9.2 (2 other biounits)

Crystal Structure of FabI from S. aureus in complex with a novel benzimidazole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x 1JT: 1-(4-methoxy-3-methylbenzyl)-5,6,7,8-tetrahydro-1H-naphtho[2,3-d]imidazole(Non-covalent)

1JT.1: 9 residues within 4Å: Chain A: F.119, A.120, Y.170, Q.178, Y.180, M.183, S.220, V.224 Ligands: NAP.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.170, A:Y.180, A:V.224 Hydrogen bonds: A:Y.180 pi-Stacking: A:Y.180, A:Y.180 1JT.3: 9 residues within 4Å: Chain B: F.119, A.120, Y.170, Q.178, Y.180, M.183, S.220, V.224 Ligands: NAP.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:Y.170, B:Y.180, B:V.224 Hydrogen bonds: B:Y.180 pi-Stacking: B:Y.180, B:Y.180

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.2: 29 residues within 4Å: Chain A: G.36, I.37, A.38, S.42, I.43, R.63, K.64, S.67, I.88, D.89, V.90, Q.91, S.116, I.117, A.118, F.119, I.143, T.168, T.169, Y.170, K.187, A.213, G.214, P.215, I.216, T.218, L.219, S.220 Ligands: 1JT.1 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:I.43, A:Y.170, A:A.213 Hydrogen bonds: A:G.36, A:I.43, A:R.63, A:R.63, A:K.64, A:S.67, A:D.89, A:D.89, A:V.90, A:I.117, A:A.118, A:K.187, A:I.216, A:I.216, A:S.220 Water bridges: A:A.44, A:S.116, A:T.168 Salt bridges: A:R.63 NAP.4: 29 residues within 4Å: Chain B: G.36, I.37, A.38, S.42, I.43, R.63, K.64, S.67, I.88, D.89, V.90, Q.91, S.116, I.117, A.118, F.119, I.143, T.168, T.169, Y.170, K.187, A.213, G.214, P.215, I.216, T.218, L.219, S.220 Ligands: 1JT.3 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:I.43, B:Y.170, B:A.213 Hydrogen bonds: B:G.36, B:I.43, B:R.63, B:R.63, B:K.64, B:S.67, B:D.89, B:D.89, B:V.90, B:I.117, B:A.118, B:K.187, B:I.216, B:I.216, B:S.220 Water bridges: B:A.44, B:S.116, B:T.168 Salt bridges: B:R.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mehboob, S. et al., To be published. To be Published

Release Date

2014-12-31

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADPH]: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Enoyl-[acyl-carrier-protein] reductase [NADPH]

Related Entries With Identical Sequence