SMTL ID : 4nzh.1

A. fumigatus flavin-dependent ornithine monooxygenase R279A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 27 residues within 4Å: Chain A: V.45, G.46, G.48, P.49, A.50, L.82, E.83, R.84, Q.85, W.90, H.91, M.94, M.101, Q.102, I.103, R.144, E.166, E.167, V.168, A.209, I.210, G.211, Y.407, S.466, L.467, L.468 Ligands: ORN.2 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:M.94, A:Y.407 Hydrogen bonds: A:A.50, A:R.84, A:Q.85, A:W.90, A:Q.102, A:V.168, A:V.168, A:L.468, A:S.469 Water bridges: A:F.47, A:G.48, A:S.51, A:E.83, A:R.84, A:A.89, A:E.167, A:G.211, A:G.212, A:G.212 Salt bridges: A:H.91 pi-Stacking: A:W.90, A:H.91 FAD.7: 27 residues within 4Å: Chain B: V.45, G.46, G.48, P.49, A.50, L.82, E.83, R.84, Q.85, W.90, H.91, M.94, M.101, Q.102, I.103, R.144, E.166, E.167, V.168, A.209, I.210, G.211, Y.407, S.466, L.467, L.468 Ligands: ORN.8 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:M.94, B:Y.407 Hydrogen bonds: B:A.50, B:R.84, B:Q.85, B:W.90, B:Q.102, B:V.168, B:V.168, B:L.468, B:S.469 Water bridges: B:F.47, B:G.48, B:S.51, B:E.83, B:R.84, B:A.89, B:E.167, B:G.211, B:G.212, B:G.212 Salt bridges: B:H.91 pi-Stacking: B:W.90, B:H.91 FAD.13: 27 residues within 4Å: Chain C: V.45, G.46, G.48, P.49, A.50, L.82, E.83, R.84, Q.85, W.90, H.91, M.94, M.101, Q.102, I.103, R.144, E.166, E.167, V.168, A.209, I.210, G.211, Y.407, S.466, L.467, L.468 Ligands: ORN.14 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:M.94, C:Y.407 Hydrogen bonds: C:A.50, C:R.84, C:Q.85, C:W.90, C:Q.102, C:V.168, C:V.168, C:L.468, C:S.469 Water bridges: C:F.47, C:G.48, C:S.51, C:E.83, C:R.84, C:A.89, C:G.211, C:G.212, C:G.212 Salt bridges: C:H.91 pi-Stacking: C:W.90, C:H.91 FAD.19: 27 residues within 4Å: Chain D: V.45, G.46, G.48, P.49, A.50, L.82, E.83, R.84, Q.85, W.90, H.91, M.94, M.101, Q.102, I.103, R.144, E.166, E.167, V.168, A.209, I.210, G.211, Y.407, S.466, L.467, L.468 Ligands: ORN.20 23 PLIP interactions: 23 interactions with chain D Hydrophobic interactions: D:M.94, D:Y.407 Hydrogen bonds: D:A.50, D:R.84, D:Q.85, D:W.90, D:Q.102, D:V.168, D:V.168, D:L.468, D:S.469 Water bridges: D:F.47, D:G.48, D:S.51, D:E.83, D:R.84, D:A.89, D:G.211, D:G.212, D:G.212 Salt bridges: D:H.91 pi-Stacking: D:W.90, D:H.91

4 x ORN: L-ornithine(Non-covalent)

ORN.2: 9 residues within 4Å: Chain A: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469 Ligands: FAD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.103, A:L.467 Hydrogen bonds: A:N.293, A:S.469 Water bridges: A:Q.102 Salt bridges: A:K.107 ORN.8: 9 residues within 4Å: Chain B: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469 Ligands: FAD.7 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.103, B:L.467 Hydrogen bonds: B:N.293, B:S.469 Water bridges: B:Q.102 Salt bridges: B:K.107 ORN.14: 9 residues within 4Å: Chain C: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469 Ligands: FAD.13 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.103, C:L.467 Hydrogen bonds: C:N.293, C:S.469 Water bridges: C:Q.102 Salt bridges: C:K.107 ORN.20: 9 residues within 4Å: Chain D: Q.102, I.103, K.107, N.293, F.296, N.323, L.467, S.469 Ligands: FAD.19 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:I.103, D:L.467 Hydrogen bonds: D:N.293, D:S.469 Water bridges: D:Q.102 Salt bridges: D:K.107

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: K.128, D.149, R.152, W.153, Q.156 Ligand excluded by PLIP GOL.4: 6 residues within 4Å: Chain A: L.239, L.240, K.241, D.242, K.245, Y.247 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: Y.336, M.339, Y.340, R.343 Chain C: H.133 Chain D: F.291, E.294 Ligand excluded by PLIP GOL.6: 4 residues within 4Å: Chain A: E.366, H.367, H.368, G.369 Ligand excluded by PLIP GOL.9: 5 residues within 4Å: Chain B: K.128, D.149, R.152, W.153, Q.156 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain B: L.239, L.240, K.241, D.242, K.245, Y.247 Ligand excluded by PLIP GOL.11: 7 residues within 4Å: Chain B: Y.336, M.339, Y.340, R.343 Chain C: F.291, E.294 Chain D: H.133 Ligand excluded by PLIP GOL.12: 4 residues within 4Å: Chain B: E.366, H.367, H.368, G.369 Ligand excluded by PLIP GOL.15: 5 residues within 4Å: Chain C: K.128, D.149, R.152, W.153, Q.156 Ligand excluded by PLIP GOL.16: 6 residues within 4Å: Chain C: L.239, L.240, K.241, D.242, K.245, Y.247 Ligand excluded by PLIP GOL.17: 7 residues within 4Å: Chain A: H.133 Chain B: F.291, E.294 Chain C: Y.336, M.339, Y.340, R.343 Ligand excluded by PLIP GOL.18: 4 residues within 4Å: Chain C: E.366, H.367, H.368, G.369 Ligand excluded by PLIP GOL.21: 5 residues within 4Å: Chain D: K.128, D.149, R.152, W.153, Q.156 Ligand excluded by PLIP GOL.22: 6 residues within 4Å: Chain D: L.239, L.240, K.241, D.242, K.245, Y.247 Ligand excluded by PLIP GOL.23: 7 residues within 4Å: Chain A: F.291, E.294 Chain B: H.133 Chain D: Y.336, M.339, Y.340, R.343 Ligand excluded by PLIP GOL.24: 4 residues within 4Å: Chain D: E.366, H.367, H.368, G.369 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robinson, R. et al., A. fumigatus flavin-dependent ornithine monooxygenase R279A mutant. To be Published

Release Date

2015-03-04

Peptides

L-ornithine N5 monooxygenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

L-ornithine N5 monooxygenase