SMTL ID : 4o03.1

Crystal structure of Ca2+ bound prothrombin deletion mutant residues 146-167

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.38 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.7, E.26, E.29 Ligands: CA.2 No protein-ligand interaction detected (PLIP) CA.2: 6 residues within 4Å: Chain A: E.7, G.11, E.16, E.26, E.29 Ligands: CA.1 No protein-ligand interaction detected (PLIP) CA.3: 7 residues within 4Å: Chain A: A.1, N.2, E.6, E.7, E.16, E.26 Ligands: CA.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:A.1 CA.4: 5 residues within 4Å: Chain A: A.1, E.6, E.16, E.20 Ligands: CA.3 No protein-ligand interaction detected (PLIP) CA.5: 1 residues within 4Å: Chain A: E.20 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 2 residues within 4Å: Chain A: L.344, N.351 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.344 NAG.7: 2 residues within 4Å: Chain A: N.78, I.79 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.79 NAG.8: 2 residues within 4Å: Chain A: N.100, T.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.102, A:T.102

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pozzi, N. et al., The linker connecting the two kringles plays a key role in prothrombin activation. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-05-21

Peptides

Prothrombin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Prothrombin

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