SMTL ID : 4o08.1 (1 other biounit)

Crystal structure of bacillus megaterium epoxide hydrolase in complex with an inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x PO6: 2-phenoxyacetamide(Non-covalent)

PO6.1: 10 residues within 4Å: Chain A: F.64, D.131, W.132, P.157, Y.178, M.179, Y.237, F.276, H.301 Ligands: PO6.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.157 Hydrogen bonds: A:D.131, A:Y.237 pi-Stacking: A:W.132 PO6.2: 6 residues within 4Å: Chain A: L.166, Q.173, S.176, K.180, I.242, L.248 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.242 Hydrogen bonds: A:Q.173 pi-Cation interactions: A:K.180 PO6.3: 11 residues within 4Å: Chain A: F.64, P.65, L.202, V.203, Y.212, P.274, T.275, S.300, H.301, E.306 Ligands: PO6.1 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.301 Hydrogen bonds: A:F.64

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: K.307, P.308, Q.309, E.310 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.309, A:Q.309, A:E.310 Water bridges: A:E.310 SO4.5: 3 residues within 4Å: Chain A: R.164, R.167, T.168 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.167, A:K.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kong, X.D. et al., Engineering of an epoxide hydrolase for efficient bioresolution of bulky pharmaco substrates. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-10-29

Peptides

Soluble epoxide hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Soluble epoxide hydrolase

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