SMTL ID : 4o14.1

Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.40, R.392, S.398, K.400, K.415 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.398, A:S.398, A:S.398 Water bridges: A:R.40, A:R.40, A:R.392, A:R.392, A:R.392, A:R.392, A:R.392, A:F.399, A:K.400, A:K.400, A:K.415, A:K.423 Salt bridges: A:R.40, A:R.392, A:K.400, A:K.415 PO4.6: 5 residues within 4Å: Chain B: R.40, R.392, S.398, K.400, K.415 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.398, B:S.398 Water bridges: B:R.392, B:R.392, B:R.392, B:K.400, B:K.400, B:K.415, A:R.196, A:D.313, A:D.313 Salt bridges: B:R.40, B:R.392, B:K.400, B:K.415, B:K.423

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: E.326, K.342, W.373 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.330, A:K.330, A:K.371 EDO.3: 4 residues within 4Å: Chain A: F.123, V.124, R.434, N.479 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.124, A:R.434, A:N.479 Water bridges: A:R.434 EDO.4: 5 residues within 4Å: Chain A: K.228, K.229, Y.230, Y.231, G.232 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.228 Water bridges: A:Q.63, A:Y.230 EDO.5: 4 residues within 4Å: Chain A: V.198, S.199 Chain B: S.199, T.203 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.199, A:S.199, B:S.199, B:S.199 EDO.7: 7 residues within 4Å: Chain B: H.191, F.193, V.242, A.244, S.275, I.309, I.351 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.275 Water bridges: B:H.191, B:D.219 EDO.8: 7 residues within 4Å: Chain B: K.169, E.187, V.213, N.214, F.215, K.216, R.477 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.169, B:V.213 EDO.9: 6 residues within 4Å: Chain A: Y.195, A.222 Chain B: F.9, N.10, L.13, A.14 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:N.10, B:N.10, A:Y.195, A:Y.195 EDO.10: 8 residues within 4Å: Chain B: D.192, G.194, Y.195, V.198, A.204, G.207, A.208, T.220 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.194, B:G.207, B:T.220, B:T.220

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors. Plos One (2014)

Release Date

2014-10-22

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase

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