SMTL ID : 4o17.1

Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: R.40, R.392, S.398, K.400, K.415 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.398, A:S.398, A:S.398 Water bridges: A:R.392, A:R.392, A:R.392, A:R.392, A:R.392, A:K.400, B:R.196 Salt bridges: A:R.40, A:R.392, A:K.400, A:K.415 PO4.8: 6 residues within 4Å: Chain B: R.40, R.392, S.398, K.400, K.415 Ligands: EDO.4 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.398 Water bridges: B:R.392, B:R.392, B:R.392, B:C.397, B:K.400, B:K.415, A:D.313 Salt bridges: B:R.40, B:R.392, B:K.400, B:K.415, B:K.423

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: K.400, C.401, F.414, K.415, S.425 Chain B: H.247, S.248, T.251 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:C.401, B:T.251 Water bridges: A:N.146, A:F.399, A:C.401, A:V.413, B:S.248, B:S.248 EDO.3: 7 residues within 4Å: Chain A: G.197, V.198, S.199, T.203, Q.388 Chain B: W.156, L.390 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.199, A:S.199, A:Q.388 Water bridges: A:S.199, A:Q.388 EDO.4: 7 residues within 4Å: Chain A: R.311, D.313, G.353, D.354 Chain B: K.423 Ligands: EDO.5, PO4.8 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:K.423, A:D.354, A:D.354 Water bridges: B:R.392 EDO.5: 6 residues within 4Å: Chain A: E.246, H.247, R.311, D.313 Chain B: Y.18 Ligands: EDO.4 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:H.247, A:H.247, A:R.311, A:D.313 Water bridges: A:R.196, A:E.246, A:S.248, B:K.400 EDO.6: 5 residues within 4Å: Chain A: H.191, F.193, V.242, S.275, I.351 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.219, A:V.242 EDO.7: 8 residues within 4Å: Chain A: D.192, G.194, Y.195, V.198, A.204, G.207, A.208, T.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.194, A:G.194, A:G.207 EDO.9: 7 residues within 4Å: Chain A: W.156, L.390, T.391 Chain B: G.197, V.198, S.199, Q.388 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.199, A:L.390 EDO.10: 8 residues within 4Å: Chain A: H.247, S.248, T.251 Chain B: K.400, C.401, F.414, K.415, S.425 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:C.401, B:F.414, B:S.425 Water bridges: B:N.146, B:F.399, A:S.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., Structural Basis for Resistance to Diverse Classes of NAMPT Inhibitors. Plos One (2014)

Release Date

2014-10-22

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase