SMTL ID : 4o1g.1

MTB adenosine kinase in complex with gamma-Thio-ATP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: D.251, T.253, V.287, S.290, G.292 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.253 NA.3: 5 residues within 4Å: Chain B: D.251, T.253, V.287, S.290, G.292 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.290

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.2: 18 residues within 4Å: Chain A: N.195, T.223, L.224, G.225, P.226, G.228, V.243, V.244, E.246, Q.249, P.252, T.253, V.255, G.256, F.259, S.281, A.284, L.288 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.195, A:T.223, A:L.224, A:G.225, A:E.246, A:Q.249, A:V.255, A:G.256, A:S.281 Water bridges: A:D.196, A:E.198, A:T.223, A:E.246, A:R.260 AGS.4: 18 residues within 4Å: Chain B: N.195, T.223, L.224, G.225, P.226, G.228, V.243, V.244, E.246, Q.249, P.252, T.253, V.255, G.256, F.259, S.281, A.284, L.288 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.195, B:T.223, B:L.224, B:G.225, B:E.246, B:Q.249, B:V.255, B:G.256, B:S.281 Water bridges: B:D.196, B:E.198, B:T.223, B:E.246, B:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snasel, J. et al., Structural Basis for Inhibition of Mycobacterial and Human Adenosine Kinase by 7-Substituted 7-(Het)aryl-7-deazaadenine Ribonucleosides. J.Med.Chem. (2014)

Release Date

2014-11-26

Peptides

Adenosine kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Adenosine kinase

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