SMTL ID : 4o4y.1

Crystal structure of the anti-hinge rabbit antibody 2095-2 in complex with IDES hinge peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: T.170, E.171, D.173 Chain B: H.165 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.172, A:D.173, A:D.173 Water bridges: A:D.173, A:S.180, B:V.164, B:T.166 GOL.2: 9 residues within 4Å: Chain A: S.8, T.86, Y.88, G.105, G.106, K.108 Chain B: G.41, K.42, G.43 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.41, B:K.42, A:G.106 GOL.3: 5 residues within 4Å: Chain A: Y.50, L.55, A.56, S.57 Chain B: D.100 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:L.55, A:S.57 Water bridges: B:D.100 GOL.4: 2 residues within 4Å: Chain B: S.6, G.7 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:G.7 Water bridges: B:E.5, B:T.108 GOL.5: 2 residues within 4Å: Chain B: V.153, T.166 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.153, B:T.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Malia, T.J. et al., Structure and specificity of an antibody targeting a proteolytically cleaved IgG hinge. Proteins (2014)

Release Date

2014-03-26

Peptides

2095-2 light chain: A
2095-2 heavy chain: B
IDES hinge peptide: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

2095-2 light chain

2095-2 heavy chain

IDES hinge peptide

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