SMTL ID : 4o5i.2 (1 other biounit)

Crystal structure of broadly neutralizing antibody F045-092 in complex with A/Victoria/361/2011 (H3N2) influenza hemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 6.50 Å

Oligo State

hetero-3-3-3-3-mer

Ligands

9 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.32, T.312 Chain B: L.52 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.52 NAG-NAG.2: 5 residues within 4Å: Chain A: N.116, Q.126, N.127, R.249 Chain G: S.103 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: N.159 Chain E: S.213, R.216 Ligands: NAG-NAG-BMA.5 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 2 residues within 4Å: Chain C: N.32, T.312 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain C: N.57, K.86, Y.88 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain C: Q.126, N.127, R.249 Chain I: S.103 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 3 residues within 4Å: Chain E: N.32, T.312 Chain F: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 4 residues within 4Å: Chain E: E.56, N.57, K.86, Y.88 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 4 residues within 4Å: Chain C: S.213, R.216 Chain E: N.159, N.240 No protein-ligand interaction detected (PLIP)

8 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 5 residues within 4Å: Chain A: N.279, N.290, V.291, N.292 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.5: 9 residues within 4Å: Chain A: A.157, L.158, R.195, T.197, N.240 Chain E: D.182, I.211, G.212 Ligands: NAG-NAG.3 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.9: 5 residues within 4Å: Chain A: S.213, R.216 Chain C: N.159, L.238, N.240 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.10: 4 residues within 4Å: Chain C: N.279, N.290, V.291, N.292 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.11: 9 residues within 4Å: Chain A: D.182, N.210, I.211, G.212 Chain C: A.157, L.158, R.195, T.197, N.240 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.14: 4 residues within 4Å: Chain E: Q.126, N.127, R.249 Chain K: S.103 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.16: 5 residues within 4Å: Chain E: N.279, N.290, V.291, N.292 Chain F: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.17: 8 residues within 4Å: Chain C: D.182, I.211 Chain E: A.157, L.158, R.195, T.197, N.240, T.242 No protein-ligand interaction detected (PLIP)

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.18: 3 residues within 4Å: Chain A: E.56, N.57, Y.88 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.56, A:N.57 NAG.19: 2 residues within 4Å: Chain A: N.120, T.122 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.120, A:T.122 NAG.20: 3 residues within 4Å: Chain B: G.150, R.153, N.154 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.154, B:N.154 NAG.21: 2 residues within 4Å: Chain C: N.120, T.122 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.120, C:T.122 NAG.22: 1 residues within 4Å: Chain D: N.154 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.154 NAG.23: 2 residues within 4Å: Chain E: N.120, T.122 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.120 NAG.24: 1 residues within 4Å: Chain F: N.154 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, P.S. et al., Receptor mimicry by antibody F045-092 facilitates universal binding to the H3 subtype of influenza virus. Nat Commun (2014)

Release Date

2014-04-16

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF
Fab F045-092 heavy chain: GIK
Fab F045-092 light chain: HJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
I

E
K

B
H

D
J

F
L

G
S

I
U

K
W

H
T

J
V

L
X

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

Fab F045-092 heavy chain

Fab F045-092 light chain

Related Entries With Identical Sequence