SMTL ID : 4o5u.1

Crystal structure of Alkylhydroperoxide Reductase subunit F from E. coli at 2.65 Ang resolution

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

homo-dimer

Ligands

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: P.453, N.454, T.455, N.456, W.457 Ligand excluded by PLIP SO4.2: 1 residues within 4Å: Chain A: R.466 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: D.473, A.474, K.475 Ligands: SO4.13 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: I.437, H.438, N.439 Ligand excluded by PLIP SO4.6: 5 residues within 4Å: Chain A: G.364, N.365, S.366, G.367, G.450 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: R.357, H.380 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: D.393, Q.394 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain A: W.326, R.327, Y.344, V.447, Q.448, G.450, L.451 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain B: P.453, N.454, T.455, N.456, W.457 Ligand excluded by PLIP SO4.12: 1 residues within 4Å: Chain B: R.466 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain B: D.473, A.474, K.475 Ligands: SO4.3 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain B: I.437, H.438, N.439 Ligand excluded by PLIP SO4.16: 5 residues within 4Å: Chain B: G.364, N.365, S.366, G.367, G.450 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain B: R.357, H.380 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain B: D.393, Q.394 Ligand excluded by PLIP SO4.19: 7 residues within 4Å: Chain B: W.326, R.327, Y.344, V.447, Q.448, G.450, L.451 Ligand excluded by PLIP

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 39 residues within 4Å: Chain A: V.218, G.219, S.220, G.221, P.222, A.223, G.224, M.241, G.242, E.243, R.244, G.247, Q.248, I.249, D.251, T.252, I.255, E.256, N.257, Q.288, S.289, A.290, A.321, T.322, G.323, A.324, W.326, Y.344, C.348, N.454, W.457, G.487, D.488, K.495, Q.496, I.497, I.498, A.500 Chain B: Y.230 28 PLIP interactions: 27 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:S.220, A:G.221, A:A.223, A:E.243, A:E.243, A:G.247, A:Q.248, A:N.257, A:N.257, A:A.290, A:A.290, A:A.324, A:D.488, A:K.495, A:I.497, B:Y.230 Water bridges: A:G.224, A:R.244, A:R.244, A:R.244, A:Q.248, A:E.256, A:E.256, A:G.323, A:D.488, A:C.489, A:I.498 pi-Stacking: A:W.326 FAD.14: 39 residues within 4Å: Chain A: Y.230 Chain B: V.218, G.219, S.220, G.221, P.222, A.223, G.224, M.241, G.242, E.243, R.244, G.247, Q.248, I.249, D.251, T.252, I.255, E.256, N.257, Q.288, S.289, A.290, A.321, T.322, G.323, A.324, W.326, Y.344, C.348, N.454, W.457, G.487, D.488, K.495, Q.496, I.497, I.498, A.500 27 PLIP interactions: 26 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.220, B:G.221, B:A.223, B:E.243, B:E.243, B:G.247, B:Q.248, B:N.257, B:N.257, B:A.290, B:A.290, B:A.324, B:D.488, B:K.495, B:I.497, A:Y.230 Water bridges: B:G.224, B:R.244, B:R.244, B:R.244, B:Q.248, B:E.256, B:E.256, B:G.323, B:C.489, B:I.498 pi-Stacking: B:W.326

2 x CD: CADMIUM ION(Non-covalent)

CD.10: 2 residues within 4Å: Chain A: H.85, H.130 No protein-ligand interaction detected (PLIP) CD.20: 2 residues within 4Å: Chain B: H.85, H.130 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dip, P.V. et al., Structure, mechanism and ensemble formation of the alkylhydroperoxide reductase subunits AhpC and AhpF from Escherichia coli. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-11-05

Peptides

Alkyl hydroperoxide reductase subunit F: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Alkyl hydroperoxide reductase subunit F

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