SMTL ID : 4o64.1 (2 other biounits)

Zinc fingers of KDM2B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.8, R.9, C.11, C.14, C.46, I.47 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:C.14, A:C.46 ZN.2: 5 residues within 4Å: Chain A: C.19, G.20, C.22, C.25, C.41 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.25, A:C.41 ZN.3: 4 residues within 4Å: Chain A: C.57, C.60, H.91, C.94 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.57, A:C.60, A:H.91, A:C.94 ZN.4: 4 residues within 4Å: Chain A: C.83, C.86, C.114, C.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.83, A:C.86, A:C.114, A:C.117

6 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.5: 4 residues within 4Å: Chain A: R.5, E.82, S.84, C.111 No protein-ligand interaction detected (PLIP) UNX.6: 8 residues within 4Å: Chain A: M.81, V.104, N.105, L.108, P.109, N.110, C.111 Ligands: UNX.10 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: D.27, M.28, G.35, K.38 No protein-ligand interaction detected (PLIP) UNX.8: 4 residues within 4Å: Chain A: M.28, K.29, K.30 Ligands: UNX.9 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain A: M.28, K.29 Ligands: UNX.8 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: V.104 Ligands: UNX.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure (2018)

Release Date

2014-04-16

Peptides

Lysine-specific demethylase 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 2B

Related Entries With Identical Sequence