- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.3: 18 residues within 4Å:- Chain A: R.185, P.202, N.203, T.206, D.242, G.243, D.245, G.246, E.247, A.249, R.250, E.255, S.256, G.259, A.260, D.263
- Ligands: CA.1, TLA.9
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:D.245, A:D.263
- Hydrogen bonds: A:T.206, A:D.242, A:G.246, A:E.247, A:R.250, A:S.256, A:A.260, A:D.263
- Water bridges: A:R.185, A:R.185, A:S.256, A:S.256
- Salt bridges: A:R.185, A:R.250
CDP.12: 21 residues within 4Å:- Chain B: K.164, Y.174, R.185, P.202, N.203, T.206, D.242, G.243, D.245, G.246, E.247, A.249, R.250, E.255, S.256, G.259, A.260, D.263, D.267
- Ligands: CA.10, TLA.17
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:D.245, B:D.263
- Hydrogen bonds: B:Y.174, B:T.206, B:D.242, B:D.242, B:G.246, B:R.250, B:S.256
- Salt bridges: B:K.164, B:K.164, B:R.185, B:R.185, B:R.250
- 9 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
MPG.4: 2 residues within 4Å:- Chain A: V.342, L.344
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:L.344, A:L.344
MPG.5: 5 residues within 4Å:- Chain A: Q.204, V.207, F.208
- Ligands: MPG.7, MPG.8
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Q.204, A:V.207, A:F.208
MPG.6: 7 residues within 4Å:- Chain A: I.191, L.195, V.200, Q.204, I.205, F.208, I.241
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.208, A:F.208
MPG.7: 7 residues within 4Å:- Chain A: V.207, F.210, Y.258, L.262, L.266
- Chain B: I.364
- Ligands: MPG.5
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.210, A:L.266, B:I.364
MPG.8: 2 residues within 4Å:- Chain A: V.207
- Ligands: MPG.5
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:V.207
MPG.13: 5 residues within 4Å:- Chain B: L.195, T.198, V.200
- Ligands: MPG.14, MPG.15
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.195, B:T.198, B:V.200
MPG.14: 9 residues within 4Å:- Chain B: I.191, L.195, V.200, Q.204, I.205, F.208, I.241
- Ligands: MPG.13, MPG.15
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Q.204, B:F.208, B:F.208, B:F.208
MPG.15: 6 residues within 4Å:- Chain B: I.191, L.194, L.195, T.198
- Ligands: MPG.13, MPG.14
2 PLIP interactions:2 interactions with chain B- Hydrophobic interactions: B:I.191, B:T.198
MPG.16: 5 residues within 4Å:- Chain B: I.292, L.295, V.350, A.353, L.354
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.295, B:V.350, B:A.353, B:L.354, B:L.354
- 2 x TLA: L(+)-TARTARIC ACID(Non-covalent)
TLA.9: 8 residues within 4Å:- Chain A: R.268, I.303, A.304, T.328, R.329, D.330, R.332
- Ligands: CDP.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.268, A:R.268, A:R.329
- Salt bridges: A:R.268, A:R.329, A:R.332
TLA.17: 10 residues within 4Å:- Chain B: Y.174, R.268, S.300, I.303, A.304, T.328, R.329, D.330, R.332
- Ligands: CDP.12
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:R.268, B:R.268, B:R.329
- Water bridges: B:R.268
- Salt bridges: B:R.268, B:R.268, B:R.332
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sciara, G. et al., Structural basis for catalysis in a CDP-alcohol phosphotransferase. Nat Commun (2014)
- Release Date
- 2014-05-14
- Peptides
- AF2299, a CDP-alcohol phosphotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 9 x MPG: [(Z)-octadec-9-enyl] (2R)-2,3-bis(oxidanyl)propanoate(Non-covalent)
- 2 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sciara, G. et al., Structural basis for catalysis in a CDP-alcohol phosphotransferase. Nat Commun (2014)
- Release Date
- 2014-05-14
- Peptides
- AF2299, a CDP-alcohol phosphotransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.