- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
CDP.2: 17 residues within 4Å:- Chain A: E.89, V.91, R.93, G.98, S.99, Y.120, D.173, F.174, K.175, D.195, T.196, C.197, R.198, R.214
- Ligands: PO4.1, C5P.3, PO4.6
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:E.89, A:S.99, A:S.99, A:D.173, A:R.214, A:R.214
- Water bridges: A:C.197, A:C.197
- Salt bridges: A:R.93, A:R.198, A:R.198, A:R.214
CDP.9: 17 residues within 4Å:- Chain B: E.89, V.91, R.93, G.98, S.99, Y.120, D.173, F.174, K.175, D.195, T.196, C.197, R.198, R.214
- Ligands: PO4.8, C5P.10, PO4.13
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:E.89, B:S.99, B:S.99, B:D.173, B:R.214, B:R.214
- Water bridges: B:C.197, B:C.197
- Salt bridges: B:R.93, B:R.198, B:R.198, B:R.214
- 2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
C5P.3: 17 residues within 4Å:- Chain A: E.89, V.91, R.93, A.97, G.98, S.99, Y.120, D.173, F.174, K.175, D.195, T.196, C.197, R.198, R.214
- Ligands: CDP.2, PO4.6
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:S.99, A:S.99, A:D.128, A:D.128, A:D.173, A:R.214, A:R.214
- Water bridges: A:C.197, A:C.197
- Salt bridges: A:R.93, A:R.198
C5P.10: 17 residues within 4Å:- Chain B: E.89, V.91, R.93, A.97, G.98, S.99, Y.120, D.173, F.174, K.175, D.195, T.196, C.197, R.198, R.214
- Ligands: CDP.9, PO4.13
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:S.99, B:S.99, B:D.128, B:D.173, B:R.214, B:R.214
- Water bridges: B:C.197, B:C.197
- Salt bridges: B:R.93, B:R.198
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.4: 5 residues within 4Å:- Chain A: R.103, P.129, M.130
- Chain B: R.103
- Ligands: ACT.11
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:M.130
- Salt bridges: A:R.103, B:R.103
ACT.11: 5 residues within 4Å:- Chain A: R.103
- Chain B: R.103, P.129, M.130
- Ligands: ACT.4
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:M.130
- Salt bridges: B:R.103, A:R.103
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.7: 15 residues within 4Å:- Chain A: A.12, K.13, M.15, L.23, H.68, E.81, K.82, L.83, M.85, K.122, E.177, A.189, D.190
- Ligands: MG.5, PO4.6
13 PLIP interactions:13 interactions with chain A- Hydrogen bonds: A:A.12, A:K.13, A:H.68, A:E.81, A:L.83, A:E.177, A:D.190
- Water bridges: A:K.13, A:K.122, A:K.122, A:E.191
- Salt bridges: A:K.13, A:K.122
ADP.14: 15 residues within 4Å:- Chain B: A.12, K.13, M.15, L.23, H.68, E.81, K.82, L.83, M.85, K.122, E.177, A.189, D.190
- Ligands: MG.12, PO4.13
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:K.13, B:H.68, B:L.83, B:E.177, B:D.190
- Water bridges: B:K.122, B:K.122, B:D.190, B:E.191
- Salt bridges: B:K.13, B:K.122
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manjunath, K. et al., SAICAR synthetase (Type-2) in complex with ADP and CDP. To be Published
- Release Date
- 2014-12-31
- Peptides
- Phosphoribosylaminoimidazole-succinocarboxamide synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)
- 2 x C5P: CYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Manjunath, K. et al., SAICAR synthetase (Type-2) in complex with ADP and CDP. To be Published
- Release Date
- 2014-12-31
- Peptides
- Phosphoribosylaminoimidazole-succinocarboxamide synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A