SMTL ID : 4oap.1

An Axe2 mutant (W190I), an acetyl-xylooligosaccharide esterase from Geobacillus Stearmophilus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

homo-octamer

Ligands

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: D.14, S.15, G.63, N.92 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain B: D.14, S.15, S.62, G.63, N.92 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain C: D.14, S.15, G.63, N.92 Ligand excluded by PLIP CL.23: 5 residues within 4Å: Chain D: D.14, S.15, S.62, G.63, N.92 Ligand excluded by PLIP CL.31: 4 residues within 4Å: Chain E: D.14, S.15, G.63, N.92 Ligand excluded by PLIP CL.38: 5 residues within 4Å: Chain F: D.14, S.15, S.62, G.63, N.92 Ligand excluded by PLIP CL.46: 4 residues within 4Å: Chain G: D.14, S.15, G.63, N.92 Ligand excluded by PLIP CL.53: 5 residues within 4Å: Chain H: D.14, S.15, S.62, G.63, N.92 Ligand excluded by PLIP

40 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: Y.109 Ligand excluded by PLIP GOL.3: 6 residues within 4Å: Chain A: P.146 Chain H: E.140, G.141, N.142, P.185 Ligands: GOL.58 Ligand excluded by PLIP GOL.4: 9 residues within 4Å: Chain A: E.27, G.28, S.29, F.30, G.31, A.32 Chain E: L.100, M.103, K.106 Ligand excluded by PLIP GOL.5: 7 residues within 4Å: Chain A: E.143, R.148, D.152, D.171, Q.173, A.174, N.177 Ligand excluded by PLIP GOL.6: 6 residues within 4Å: Chain A: L.180, K.181, T.182, L.183, Y.184 Ligands: GOL.54 Ligand excluded by PLIP GOL.9: 7 residues within 4Å: Chain B: P.146 Chain E: E.140, G.141, N.142, Y.184, P.185 Ligands: GOL.36 Ligand excluded by PLIP GOL.10: 4 residues within 4Å: Chain B: F.169, V.170, D.171, E.210 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain B: E.27, G.28, S.29, L.33, V.42, I.54, R.55, V.56 Ligand excluded by PLIP GOL.12: 3 residues within 4Å: Chain B: S.29, F.30, G.31 Ligand excluded by PLIP GOL.13: 5 residues within 4Å: Chain B: L.180, K.181, Y.184 Chain E: Y.98 Ligands: GOL.33 Ligand excluded by PLIP GOL.17: 1 residues within 4Å: Chain C: Y.109 Ligand excluded by PLIP GOL.18: 6 residues within 4Å: Chain C: P.146 Chain F: E.140, G.141, N.142, P.185 Ligands: GOL.43 Ligand excluded by PLIP GOL.19: 9 residues within 4Å: Chain C: E.27, G.28, S.29, F.30, G.31, A.32 Chain G: L.100, M.103, K.106 Ligand excluded by PLIP GOL.20: 7 residues within 4Å: Chain C: E.143, R.148, D.152, D.171, Q.173, A.174, N.177 Ligand excluded by PLIP GOL.21: 6 residues within 4Å: Chain C: L.180, K.181, T.182, L.183, Y.184 Ligands: GOL.39 Ligand excluded by PLIP GOL.24: 7 residues within 4Å: Chain D: P.146 Chain G: E.140, G.141, N.142, Y.184, P.185 Ligands: GOL.51 Ligand excluded by PLIP GOL.25: 4 residues within 4Å: Chain D: F.169, V.170, D.171, E.210 Ligand excluded by PLIP GOL.26: 8 residues within 4Å: Chain D: E.27, G.28, S.29, L.33, V.42, I.54, R.55, V.56 Ligand excluded by PLIP GOL.27: 3 residues within 4Å: Chain D: S.29, F.30, G.31 Ligand excluded by PLIP GOL.28: 5 residues within 4Å: Chain D: L.180, K.181, Y.184 Chain G: Y.98 Ligands: GOL.48 Ligand excluded by PLIP GOL.32: 1 residues within 4Å: Chain E: Y.109 Ligand excluded by PLIP GOL.33: 6 residues within 4Å: Chain B: E.140, G.141, N.142, P.185 Chain E: P.146 Ligands: GOL.13 Ligand excluded by PLIP GOL.34: 9 residues within 4Å: Chain C: L.100, M.103, K.106 Chain E: E.27, G.28, S.29, F.30, G.31, A.32 Ligand excluded by PLIP GOL.35: 7 residues within 4Å: Chain E: E.143, R.148, D.152, D.171, Q.173, A.174, N.177 Ligand excluded by PLIP GOL.36: 6 residues within 4Å: Chain E: L.180, K.181, T.182, L.183, Y.184 Ligands: GOL.9 Ligand excluded by PLIP GOL.39: 7 residues within 4Å: Chain C: E.140, G.141, N.142, Y.184, P.185 Chain F: P.146 Ligands: GOL.21 Ligand excluded by PLIP GOL.40: 4 residues within 4Å: Chain F: F.169, V.170, D.171, E.210 Ligand excluded by PLIP GOL.41: 8 residues within 4Å: Chain F: E.27, G.28, S.29, L.33, V.42, I.54, R.55, V.56 Ligand excluded by PLIP GOL.42: 3 residues within 4Å: Chain F: S.29, F.30, G.31 Ligand excluded by PLIP GOL.43: 5 residues within 4Å: Chain C: Y.98 Chain F: L.180, K.181, Y.184 Ligands: GOL.18 Ligand excluded by PLIP GOL.47: 1 residues within 4Å: Chain G: Y.109 Ligand excluded by PLIP GOL.48: 6 residues within 4Å: Chain D: E.140, G.141, N.142, P.185 Chain G: P.146 Ligands: GOL.28 Ligand excluded by PLIP GOL.49: 9 residues within 4Å: Chain A: L.100, M.103, K.106 Chain G: E.27, G.28, S.29, F.30, G.31, A.32 Ligand excluded by PLIP GOL.50: 7 residues within 4Å: Chain G: E.143, R.148, D.152, D.171, Q.173, A.174, N.177 Ligand excluded by PLIP GOL.51: 6 residues within 4Å: Chain G: L.180, K.181, T.182, L.183, Y.184 Ligands: GOL.24 Ligand excluded by PLIP GOL.54: 7 residues within 4Å: Chain A: E.140, G.141, N.142, Y.184, P.185 Chain H: P.146 Ligands: GOL.6 Ligand excluded by PLIP GOL.55: 4 residues within 4Å: Chain H: F.169, V.170, D.171, E.210 Ligand excluded by PLIP GOL.56: 8 residues within 4Å: Chain H: E.27, G.28, S.29, L.33, V.42, I.54, R.55, V.56 Ligand excluded by PLIP GOL.57: 3 residues within 4Å: Chain H: S.29, F.30, G.31 Ligand excluded by PLIP GOL.58: 5 residues within 4Å: Chain A: Y.98 Chain H: L.180, K.181, Y.184 Ligands: GOL.3 Ligand excluded by PLIP

12 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 6 residues within 4Å: Chain A: T.35, Y.40, P.195, S.196, V.197, H.200 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.35 Water bridges: A:Y.40 Salt bridges: A:H.200 ACT.14: 7 residues within 4Å: Chain B: C.19, T.35, Y.40, P.195, S.196, V.197, H.200 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.35, B:Y.40 Water bridges: B:V.197 Salt bridges: B:H.200 ACT.15: 4 residues within 4Å: Chain B: E.74, I.78, E.123, L.127 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.127 Hydrogen bonds: B:E.123 ACT.22: 6 residues within 4Å: Chain C: T.35, Y.40, P.195, S.196, V.197, H.200 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.35 Water bridges: C:Y.40 Salt bridges: C:H.200 ACT.29: 7 residues within 4Å: Chain D: C.19, T.35, Y.40, P.195, S.196, V.197, H.200 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.35, D:Y.40 Water bridges: D:V.197 Salt bridges: D:H.200 ACT.30: 4 residues within 4Å: Chain D: E.74, I.78, E.123, L.127 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.127 Hydrogen bonds: D:E.123 ACT.37: 6 residues within 4Å: Chain E: T.35, Y.40, P.195, S.196, V.197, H.200 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:T.35 Water bridges: E:Y.40 Salt bridges: E:H.200 ACT.44: 7 residues within 4Å: Chain F: C.19, T.35, Y.40, P.195, S.196, V.197, H.200 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:T.35, F:Y.40 Water bridges: F:V.197 Salt bridges: F:H.200 ACT.45: 4 residues within 4Å: Chain F: E.74, I.78, E.123, L.127 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.127 Hydrogen bonds: F:E.123 ACT.52: 6 residues within 4Å: Chain G: T.35, Y.40, P.195, S.196, V.197, H.200 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:T.35 Water bridges: G:Y.40 Salt bridges: G:H.200 ACT.59: 7 residues within 4Å: Chain H: C.19, T.35, Y.40, P.195, S.196, V.197, H.200 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:T.35, H:Y.40 Water bridges: H:V.197 Salt bridges: H:H.200 ACT.60: 4 residues within 4Å: Chain H: E.74, I.78, E.123, L.127 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.127 Hydrogen bonds: H:E.123

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansky, S. et al., An Axe2 mutant (W190I), an acetyl-xylooligosaccharide esterase from Geobacillus Stearmophilus. To be Published

Release Date

2015-01-14

Peptides

Acetyl xylan esterase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Acetyl xylan esterase