SMTL ID : 4ob5.1

Ontogeny of recognition specificity and functionality for the broadly neutralizing anti-HIV antibody 4E10

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-oligomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain B: Q.39, Q.40, K.41, Q.44, A.45, R.47 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.41, B:Q.44, B:A.45, B:R.47 Water bridges: B:A.45 GOL.2: 4 residues within 4Å: Chain B: S.54, R.56, S.65, G.66 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.56, B:R.56, B:G.66 GOL.3: 5 residues within 4Å: Chain A: G.42 Chain B: G.10, Q.102, G.103, K.105 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.10, B:G.103, B:K.105, A:G.42

1 x TMO: TRIMETHYLAMINE OXIDE(Non-covalent)

TMO.4: 6 residues within 4Å: Chain A: T.101, I.111, Q.115 Chain B: Y.51, A.57, T.58 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Water bridges: A:Q.115 Hydrogen bonds: B:T.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Finton, K.A. et al., Ontogeny of Recognition Specificity and Functionality for the Broadly Neutralizing Anti-HIV Antibody 4E10. Plos Pathog. (2014)

Release Date

2014-10-08

Peptides

4E10 antibody germline precursor 7 heavy chain Fv: A
4E10 antibody germline precursor 7 light chain Fv: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

4E10 antibody germline precursor 7 heavy chain Fv

4E10 antibody germline precursor 7 light chain Fv