SMTL ID : 4obs.1

Crystal structure of human alpha-L-iduronidase in the P212121 form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-MAN-MAN.1: 10 residues within 4Å: Chain A: S.281, P.283, Y.329, H.330, H.332, Q.336, Q.344, N.346, V.468, F.469 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.330, A:H.330, A:Q.344 Water bridges: A:H.330

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.84, T.86, H.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.84, A:H.87 NAG.3: 3 residues within 4Å: Chain A: I.244, E.248, N.389 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.244 Hydrogen bonds: A:E.248, A:E.248, A:N.389

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 8 residues within 4Å: Chain A: L.14, W.15, N.305, A.309, Q.374, L.375, W.376, A.377 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.377 Water bridges: A:N.305, A:Q.374 GOL.5: 8 residues within 4Å: Chain A: Q.45, L.48, A.49, L.94, E.97, N.98, R.529, L.531 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.45, A:N.98, A:R.529 GOL.6: 4 residues within 4Å: Chain A: T.526, R.527, L.528, S.607 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.527, A:L.528, A:L.528 GOL.7: 3 residues within 4Å: Chain A: P.467, V.468, F.469 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.468, A:F.469, A:F.469 GOL.8: 6 residues within 4Å: Chain A: K.298, N.389, H.390, T.391, D.418, D.419 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.298, A:N.389, A:D.418, A:R.421 GOL.9: 5 residues within 4Å: Chain A: Y.555, E.556, V.569, S.570, R.571 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.571 Water bridges: A:R.571

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 6 residues within 4Å: Chain A: D.275, P.276, L.277, W.286, R.287, R.337 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 4 residues within 4Å: Chain A: R.19, R.22, R.57, K.60 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.19 Salt bridges: A:R.22, A:R.57, A:K.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bie, H. et al., Crystal structure of human alpha-L-iduronidase in the P212121 form. To be Published

Release Date

2015-01-14

Peptides

Alpha-L-iduronidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alpha-L-iduronidase

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