SMTL ID : 4ocv.1

N-acetylhexosamine 1-phosphate kinase_ATCC15697 in complex with GlcNAc and AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)

NDG.1: 16 residues within 4Å: Chain A: H.51, I.52, F.75, I.166, F.169, D.228, K.230, T.251, R.266, E.274, C.323, R.326, F.327, Y.337, F.338 Ligands: ANP.2 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:F.75, A:I.166, A:F.169, A:T.251 Hydrogen bonds: A:H.51, A:D.228, A:D.228, A:K.230, A:R.266, A:E.274, A:R.326, A:R.326, A:Y.337 Water bridges: A:D.228, A:D.228, A:D.228, A:D.263, A:D.263, A:D.263 Salt bridges: A:H.51, A:K.230

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 20 residues within 4Å: Chain A: Y.47, G.48, G.50, H.51, I.52, N.53, T.55, I.66, Q.68, L.100, Y.122, K.123, F.124, I.125, S.130, K.230, N.233, I.247, D.248 Ligands: NDG.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.50, A:H.51, A:H.51, A:I.52, A:N.53, A:N.53, A:T.55, A:Q.68, A:K.123, A:I.125, A:S.130, A:S.130, A:K.230, A:D.248 Water bridges: A:D.49, A:G.50, A:G.50, A:N.232, A:D.248, A:D.248, A:D.248, A:D.248

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain A: F.200, H.204, R.358 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.203, A:S.203, A:E.361 Salt bridges: A:H.204, A:R.358 SO4.4: 5 residues within 4Å: Chain A: R.69, M.70, N.71, T.72, G.73 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.72, A:T.72, A:G.73 Water bridges: A:R.69, A:R.69, A:T.72, A:T.72 Salt bridges: A:R.69 SO4.5: 1 residues within 4Å: Chain A: R.83 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.86 SO4.6: 2 residues within 4Å: Chain A: T.305, A.306 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.306 Water bridges: A:T.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, K.C. et al., Insights into the binding specificity and catalytic mechanism of N-acetylhexosamine 1-phosphate kinases through multiple reaction complexes. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-05-14

Peptides

N-acetylhexosamine 1-phosphate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-acetylhexosamine 1-phosphate kinase

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