SMTL ID : 4od5.1 (5 other biounits)

Substrate-bound structure of a UbiA homolog from Aeropyrum pernix K1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.56 Å

Oligo State

monomer

Ligands

1 x GST: GERANYL S-THIOLODIPHOSPHATE(Non-covalent)

GST.1: 14 residues within 4Å: Chain A: H.27, R.62, D.73, D.77, R.82, R.86, Y.134, L.148, L.152, D.194, F.277 Ligands: PHB.2, MG.3, MG.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.152, A:F.277 Hydrogen bonds: A:N.69, A:Y.134, A:Y.134 Water bridges: A:R.82 Salt bridges: A:R.82, A:R.86, A:K.138

1 x PHB: P-HYDROXYBENZOIC ACID(Non-covalent)

PHB.2: 7 residues within 4Å: Chain A: L.61, R.62, G.65, M.66, N.69, V.151 Ligands: GST.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.65 Salt bridges: A:R.62

2 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.3: 2 residues within 4Å: Chain A: D.77 Ligands: GST.1 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.77 MG.4: 1 residues within 4Å: Ligands: GST.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, W. et al., Structural insights into ubiquinone biosynthesis in membranes. Science (2014)

Release Date

2014-03-19

Peptides

4-hydroxybenzoate octaprenyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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4-hydroxybenzoate octaprenyltransferase

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