SMTL ID : 4odp.1

Structure of SlyD delta-IF from Thermus thermophilus in complex with S2-W23A peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: Y.29, L.30, N.35, H.99, A.100 Chain B: K.9 Ligand excluded by PLIP

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 1 residues within 4Å: Chain A: E.49 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.49, H2O.1, H2O.3, H2O.3, H2O.4 CA.3: 1 residues within 4Å: Chain A: A.52 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:A.52, H2O.1, H2O.2, H2O.3, H2O.4 CA.4: 3 residues within 4Å: Chain A: H.33, R.34, N.35 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.33, H2O.1, H2O.3, H2O.3, H2O.4 CA.5: 1 residues within 4Å: Chain A: Q.16 No protein-ligand interaction detected (PLIP)

1 x NI: NICKEL (II) ION(Non-covalent)

NI.6: 5 residues within 4Å: Chain A: H.97, H.99, H.101, H.108, H.110 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.97, A:H.99, A:H.101, A:H.108, A:H.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Quistgaard, E.M. et al., Molecular insights into substrate recognition and catalytic mechanism of the chaperone and FKBP peptidyl-prolyl isomerase SlyD. BMC Biol. (2016)

Release Date

2015-01-14

Peptides

Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera: A
30S ribosomal protein S2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidyl-prolyl cis-trans isomerase SlyD, Peptidyl-prolyl cis-trans isomerase FKBP1A chimera

30S ribosomal protein S2

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