SMTL ID : 4oe4.1

Crystal Structure of Yeast ALDH4A1 Complexed with NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.17 Å

Oligo State

homo-hexamer

Ligands

6 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 20 residues within 4Å: Chain A: V.207, S.208, P.209, F.210, K.233, P.234, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294, G.318, C.350, E.457, F.459 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.208, A:S.208, A:F.210, A:K.233, A:S.287, A:E.457 Water bridges: A:S.235, A:S.235, A:Q.236 NAD.2: 15 residues within 4Å: Chain B: V.207, S.208, P.209, F.210, K.233, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:S.208, B:F.210, B:K.233, B:T.270, B:S.287 Water bridges: B:S.235, B:Q.236 NAD.3: 20 residues within 4Å: Chain C: V.207, S.208, P.209, F.210, K.233, P.234, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294, G.318, C.350, E.457, F.459 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:S.208, C:S.208, C:F.210, C:K.233, C:S.287, C:E.457 Water bridges: C:S.235, C:S.235, C:Q.236 NAD.4: 15 residues within 4Å: Chain D: V.207, S.208, P.209, F.210, K.233, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:S.208, D:F.210, D:K.233, D:T.270, D:S.287 Water bridges: D:S.235, D:Q.236 NAD.5: 20 residues within 4Å: Chain E: V.207, S.208, P.209, F.210, K.233, P.234, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294, G.318, C.350, E.457, F.459 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:S.208, E:S.208, E:F.210, E:K.233, E:S.287, E:E.457 Water bridges: E:S.235, E:S.235, E:Q.236 NAD.6: 15 residues within 4Å: Chain F: V.207, S.208, P.209, F.210, K.233, S.235, P.266, V.267, T.270, F.284, T.285, G.286, S.287, V.290, L.294 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:S.208, F:F.210, F:K.233, F:T.270, F:S.287 Water bridges: F:S.235, F:Q.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pemberton, T.A. et al., Structural Studies of Yeast Delta (1)-Pyrroline-5-carboxylate Dehydrogenase (ALDH4A1): Active Site Flexibility and Oligomeric State. Biochemistry (2014)

Release Date

2014-02-19

Peptides

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial

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