SMTL ID : 4of8.1 (1 other biounit)

Crystal Structure of Rst D1-D2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: D.56, L.57, F.60, Y.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.63, A:Y.63 NA.4: 4 residues within 4Å: Chain B: D.56, L.57, F.60, Y.63 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:F.60, B:Y.63

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.86, A.87, G.109, L.110, T.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.86, A:D.86 Water bridges: A:R.88 GOL.3: 5 residues within 4Å: Chain A: K.46, F.49, F.60 Chain B: P.95, A.102 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:R.104 Hydrogen bonds: A:K.46, A:K.46 GOL.5: 6 residues within 4Å: Chain B: R.62, Y.63, A.64, V.66, D.77, Y.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.62, B:Y.79 Water bridges: B:R.28, B:D.77 GOL.6: 6 residues within 4Å: Chain B: D.86, A.87, R.88, G.109, L.110, T.111 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.86, B:A.87, B:T.111 Water bridges: B:R.88, B:T.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozkan, E. et al., Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis. Cell(Cambridge,Mass.) (2014)

Release Date

2014-02-19

Peptides

Irregular chiasm C-roughest protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Irregular chiasm C-roughest protein

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