SMTL ID : 4ofl.1 (1 other biounit)

Crystal structure of YntA from Yersinia pestis in complex with Ni(L-His)2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.482 Ligands: HIS.2, HIS.3 4 PLIP interactions: 3 Ligand-Ligand interactions, 1 interactions with chain A Metal complexes: HIS.2, HIS.3, HIS.3, A:H.482

2 x HIS: HISTIDINE(Non-covalent)

HIS.2: 9 residues within 4Å: Chain A: R.344, W.369, F.383, G.384, W.385, Y.406, H.482 Ligands: NI.1, HIS.3 11 PLIP interactions: 2 Ligand-Ligand interactions, 9 interactions with chain A Salt bridges: H.2, H.3, A:R.344, A:H.482 Hydrophobic interactions: A:W.369, A:F.383, A:W.385 Hydrogen bonds: A:G.384, A:G.384 pi-Stacking: A:W.369, A:W.369 HIS.3: 3 residues within 4Å: Chain A: H.482 Ligands: NI.1, HIS.2 5 PLIP interactions: 4 Ligand-Ligand interactions, 1 interactions with chain A Hydrogen bonds: H.3, H.3 Salt bridges: H.2, H.3, A:H.482

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lebrette, H. et al., Promiscuous nickel import in human pathogens: structure, thermodynamics, and evolution of extracytoplasmic nickel-binding proteins. Structure (2014)

Release Date

2014-10-01

Peptides

Extracytoplasmic Nickel-Binding Protein YpYntA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Extracytoplasmic Nickel-Binding Protein YpYntA

Related Entries With Identical Sequence