SMTL ID : 4ofy.2 (2 other biounits)

Crystal Structure of the Complex of SYG-1 D1-D2 and SYG-2 D1-D4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: S.77, N.78 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain B: H.167, N.169 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain B: N.11, F.103 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.11 NAG.4: 4 residues within 4Å: Chain B: N.133, D.159, S.177, V.179 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:V.179 Hydrogen bonds: B:S.177, B:S.177 NAG.5: 2 residues within 4Å: Chain B: T.205, N.207 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.205, B:N.207 NAG.6: 4 residues within 4Å: Chain B: N.235, T.237, S.278, I.280 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.280 NAG.7: 4 residues within 4Å: Chain B: D.250, R.259, N.295, S.297 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.259, B:S.297

1 x EMC: ETHYL MERCURY ION(Non-covalent)

EMC.8: 3 residues within 4Å: Chain B: N.333, Q.335, C.375 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ozkan, E. et al., Extracellular Architecture of the SYG-1/SYG-2 Adhesion Complex Instructs Synaptogenesis. Cell(Cambridge,Mass.) (2014)

Release Date

2014-02-19

Peptides

Protein SYG-1, isoform b: A
Protein SYG-2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

Protein SYG-1, isoform b

Protein SYG-2

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