SMTL ID : 4oic.1

Crystal structrual of a soluble protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x A8S: (2Z,4E)-5-[(1S)-1-hydroxy-2,6,6-trimethyl-4-oxocyclohex-2-en-1-yl]-3-methylpenta-2,4-dienoic acid(Non-covalent)

A8S.1: 14 residues within 4Å: Chain A: K.74, F.76, V.98, A.104, S.107, E.109, F.123, H.130, L.132, Y.135, F.180, T.181, V.184, N.188 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.76, A:V.98, A:A.104, A:H.130, A:L.132, A:Y.135, A:T.181, A:V.184 Hydrogen bonds: A:N.188 Water bridges: A:K.74, A:R.131 Salt bridges: A:K.74

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: R.78 Chain B: R.159, E.161 Ligand excluded by PLIP

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 4 residues within 4Å: Chain B: D.205, D.386, D.448 Ligands: MN.4 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.386, B:D.448, H2O.5, H2O.5, H2O.7 MN.4: 3 residues within 4Å: Chain B: D.205, G.206 Ligands: MN.3 6 PLIP interactions: 2 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.205, B:G.206, H2O.5, H2O.5, H2O.5, H2O.5 MN.5: 2 residues within 4Å: Chain B: D.386, D.390 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:D.386, H2O.5, H2O.6, H2O.6, H2O.8 MN.6: 1 residues within 4Å: Chain B: D.324 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.324, H2O.6, H2O.6

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain B: R.322, E.323 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.323 Water bridges: B:N.321

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Y. et al., Identification and characterization of ABA receptors in Oryza sativa. Plos One (2014)

Release Date

2015-01-21

Peptides

Bet v I allergen-like: A
Probable protein phosphatase 2C 6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bet v I allergen-like

Probable protein phosphatase 2C 6