SMTL ID : 4oig.2 (1 other biounit)

Dengue Virus Non-structural Protein NS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: N.67, G.68 Chain B: N.67, G.68 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:G.68, B:G.68 Water bridges: B:S.66, B:V.69 SO4.2: 3 residues within 4Å: Chain A: W.65, N.67 Chain B: K.60 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.60, A:N.67 Salt bridges: B:K.60 SO4.3: 7 residues within 4Å: Chain A: K.139, T.140, I.141, H.142, E.143, K.172, E.173 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.142, A:E.143 Salt bridges: A:K.139, A:H.142, A:K.172 SO4.4: 5 residues within 4Å: Chain A: K.39, W.43 Chain B: H.14, S.61, H.62 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Water bridges: A:K.39 Salt bridges: A:K.39, B:H.14, B:H.62 Hydrogen bonds: B:S.61 SO4.5: 5 residues within 4Å: Chain A: H.14, S.61, H.62 Chain B: K.39, W.43 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.61, B:W.43 Salt bridges: A:H.14, A:H.62, B:K.39 SO4.6: 5 residues within 4Å: Chain B: K.139, I.141, H.142, E.143, K.172 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.142, B:E.143 Water bridges: B:E.143 Salt bridges: B:K.139, B:K.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edeling, M.A. et al., Structural basis of Flavivirus NS1 assembly and antibody recognition. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-03-05

Peptides

Non-structural protein 1, NS1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Non-structural protein 1, NS1

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