SMTL ID : 4oiv.1

Structural basis for small molecule NDB as a selective antagonist of FXR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x XX9: N-benzyl-N-(3-tert-butyl-4-hydroxyphenyl)-2,6-dichloro-4-(dimethylamino)benzamide(Non-covalent)

XX9.1: 17 residues within 4Å: Chain A: L.44, T.45, M.47, A.48, H.51, V.52, M.85, F.86, S.89, I.119, M.122, Y.126, A.205, L.208, M.209, W.211, R.212 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:M.47, A:I.119, A:M.122, A:L.208 Hydrogen bonds: A:H.51 Water bridges: A:A.205 XX9.2: 19 residues within 4Å: Chain B: L.44, T.45, M.47, A.48, H.51, V.52, M.85, F.86, S.89, F.93, I.109, Y.118, M.122, Y.126, A.205, L.208, M.209, W.211, R.212 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.44, B:M.47, B:F.93, B:I.109, B:I.109, B:M.122 Hydrogen bonds: B:H.51 Water bridges: B:A.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, X. et al., Structural Basis for Small Molecule NDB (N-Benzyl-N-(3-(tert-butyl)-4-hydroxyphenyl)-2,6-dichloro-4-(dimethylamino) Benzamide) as a Selective Antagonist of Farnesoid X Receptor alpha (FXR alpha ) in Stabilizing the Homodimerization of the Receptor. J.Biol.Chem. (2015)

Release Date

2015-03-25

Peptides

Bile acid receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Bile acid receptor