- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.31 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
5GP.2: 18 residues within 4Å:- Chain A: G.13, H.130, D.132, H.213, V.217, D.244, E.289, H.294, H.326, K.328
- Chain B: P.142, Y.145, W.175, P.176, L.178, E.181
- Ligands: ZN.3, ZN.4
8 PLIP interactions:2 interactions with chain B, 6 interactions with chain A- Salt bridges: B:E.181, A:H.130, A:H.213, A:H.294, A:H.326, A:K.328
- pi-Cation interactions: B:Y.145
- Hydrogen bonds: A:K.328
5GP.6: 18 residues within 4Å:- Chain A: P.142, Y.145, W.175, P.176, L.178, E.181
- Chain B: G.13, H.130, D.132, H.213, V.217, D.244, E.289, H.294, H.326, K.328
- Ligands: ZN.7, ZN.8
8 PLIP interactions:6 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:K.328
- Salt bridges: B:H.130, B:H.213, B:H.294, B:H.326, B:K.328, A:E.181
- pi-Cation interactions: A:Y.145
- 4 x ZN: ZINC ION(Non-covalent)
ZN.3: 6 residues within 4Å:- Chain A: H.128, H.130, H.213, D.244
- Ligands: 5GP.2, ZN.4
6 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:H.128, A:H.130, A:H.213, A:D.244, H2O.1, 5GP.2
ZN.4: 6 residues within 4Å:- Chain A: D.132, H.133, D.244, H.326
- Ligands: 5GP.2, ZN.3
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:D.132, A:H.133, A:D.244, A:H.326, H2O.1
ZN.7: 6 residues within 4Å:- Chain B: H.128, H.130, H.213, D.244
- Ligands: 5GP.6, ZN.8
6 PLIP interactions:4 interactions with chain B, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: B:H.128, B:H.130, B:H.213, B:D.244, 5GP.6, H2O.9
ZN.8: 6 residues within 4Å:- Chain B: D.132, H.133, D.244, H.326
- Ligands: 5GP.6, ZN.7
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.132, B:H.133, B:D.244, B:H.326, H2O.9
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tian, Y. et al., Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate. Biochemistry (2014)
- Release Date
- 2014-12-03
- Peptides
- 3',5'-cyclic-nucleotide phosphodiesterase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.31 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 2 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tian, Y. et al., Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cyclic adenosine and guanosine 3',5'-monophosphate. Biochemistry (2014)
- Release Date
- 2014-12-03
- Peptides
- 3',5'-cyclic-nucleotide phosphodiesterase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A