SMTL ID : 4okf.1

RNase S in complex with an artificial peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

hetero-1-1-mer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.7, Q.11 Chain B: R.19, K.21 Ligands: CL.3 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.11 Water bridges: A:K.7, A:K.7, B:R.19 Salt bridges: A:K.7, B:R.19, B:K.21 SO4.5: 6 residues within 4Å: Chain A: F.8, Q.11, H.12 Chain B: V.98, H.99, F.100 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.11, B:F.100 Salt bridges: A:H.12, B:H.99

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: T.3, A.4 Ligand excluded by PLIP CL.3: 6 residues within 4Å: Chain A: R.10, Q.11 Chain B: N.14, L.15, R.19 Ligands: SO4.1 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: S.15 Chain B: S.30, L.31 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: R.65 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: K.46 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: H.12 Chain B: N.24, T.25, F.100 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: Q.49, T.50 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain B: Q.49, N.51, A.89, E.91, H.99 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: R.19, C.20, Y.72 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: A.82, N.83 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: R.19, P.22 Ligand excluded by PLIP CL.14: 3 residues within 4Å: Chain B: C.45, K.46, D.101 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gao, J. et al., X-ray structure of a RNase S variant in complex with an artificial peptide. To be Published

Release Date

2015-03-04

Peptides

Ribonuclease pancreatic: A
Ribonuclease pancreatic: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonuclease pancreatic

Ribonuclease pancreatic

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