SMTL ID : 4omr.1

Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase from Thermobifida fusca YX in complex with acetoacetyl-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-trimer

Ligands

3 x CAA: ACETOACETYL-COENZYME A(Non-covalent)

CAA.1: 20 residues within 4Å: Chain A: H.56, R.57, R.58, A.60, S.94, G.95, I.96, D.97, L.98, H.154, I.156, G.157, A.158, K.180, E.181, L.184, L.186, L.190 Chain B: Q.280 Ligands: BEN.2 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:I.96, A:L.186 Hydrogen bonds: A:S.94, A:S.94, A:I.96, A:I.96, A:L.98, A:A.158, A:K.180, A:E.181 Water bridges: A:H.56, B:Q.280 Salt bridges: A:R.58, A:R.58 CAA.3: 20 residues within 4Å: Chain B: H.56, R.57, R.58, A.60, S.94, G.95, I.96, D.97, L.98, H.154, I.156, G.157, A.158, K.180, E.181, L.184, L.186, L.190 Chain C: Q.280 Ligands: BEN.4 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:I.96, B:L.186 Hydrogen bonds: B:S.94, B:S.94, B:I.96, B:I.96, B:L.98, B:A.158, B:K.180 Water bridges: B:H.56, C:Q.280 Salt bridges: B:R.58, B:R.58 CAA.5: 20 residues within 4Å: Chain A: Q.280 Chain C: H.56, R.57, R.58, A.60, S.94, G.95, I.96, D.97, L.98, H.154, I.156, G.157, A.158, K.180, E.181, L.184, L.186, L.190 Ligands: BEN.6 13 PLIP interactions: 12 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:I.96, C:L.186 Hydrogen bonds: C:S.94, C:S.94, C:I.96, C:I.96, C:L.98, C:A.158, C:K.180 Water bridges: C:H.56, A:Q.280 Salt bridges: C:R.58, C:R.58

3 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.2: 9 residues within 4Å: Chain A: I.96, M.100, F.101, P.112, I.130, Y.133, D.189, L.190 Ligands: CAA.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.96, A:F.101, A:P.112, A:Y.133 Hydrogen bonds: A:D.189 Water bridges: A:D.189 BEN.4: 9 residues within 4Å: Chain B: I.96, M.100, F.101, P.112, I.130, Y.133, D.189, L.190 Ligands: CAA.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:I.96, B:F.101, B:P.112, B:Y.133 Hydrogen bonds: B:D.189 Water bridges: B:D.189 BEN.6: 9 residues within 4Å: Chain C: I.96, M.100, F.101, P.112, I.130, Y.133, D.189, L.190 Ligands: CAA.5 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:I.96, C:F.101, C:P.112, C:Y.133 Hydrogen bonds: C:D.189 Water bridges: C:D.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Langner, K.M. et al., Crystal structure of Tfu_1878, a putative enoyl-CoA hydratase from Thermobifida fusca YX in complex with acetoacetyl-CoA. To be Published

Release Date

2014-04-02

Peptides

Enoyl-CoA hydratase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Enoyl-CoA hydratase

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