SMTL ID : 4onf.1

Fab fragment of 3D6 in complex with amyloid beta 1-7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ASP- ALA- GLU- PHE- ARG- HIS: Amyloid beta A4 protein(Non-covalent)

ASP-ALA-GLU-PHE-ARG-HIS.1: 19 residues within 4Å: Chain A: G.33, M.34, W.47, S.50, I.51, R.52, Y.59, Y.99, S.105, S.106 Chain B: D.31, D.33, Y.37, W.94, G.96, T.97, H.98, F.99, R.101 23 PLIP interactions: 11 interactions with chain A, 12 interactions with chain B Hydrophobic interactions: A:Y.59, A:Y.99, A:Y.99, A:Y.99, A:Y.99, A:Y.99 Hydrogen bonds: A:S.50, A:S.50, A:R.52, A:S.106, B:Y.37, B:G.96, B:R.101, B:R.101 Water bridges: A:Y.99, B:D.33, B:G.96, B:R.101 Salt bridges: B:D.31, B:D.33, B:R.101, B:R.101 pi-Cation interactions: B:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Feinberg, H. et al., Crystal structure reveals conservation of amyloid-beta conformation recognized by 3D6 following humanization to bapineuzumab. Alzheimers Res Ther (2014)

Release Date

2014-06-11

Peptides

3D6 FAB ANTIBODY HEAVY CHAIN: A
3D6 FAB ANTIBODY LIGHT CHAIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

3D6 FAB ANTIBODY HEAVY CHAIN

3D6 FAB ANTIBODY LIGHT CHAIN

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