SMTL ID : 4onh.1 (1 other biounit)

Crystal Structure of DN6 TCR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.01 Å

Oligo State

hetero-2-2-mer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: Y.47, N.65 No protein-ligand interaction detected (PLIP) NAG.6: 1 residues within 4Å: Chain B: N.21 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.21 NAG.8: 2 residues within 4Å: Chain C: Y.47, N.65 No protein-ligand interaction detected (PLIP) NAG.13: 1 residues within 4Å: Chain D: N.21 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.21

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 1 residues within 4Å: Chain A: L.156 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: V.165, H.166, S.167 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: A.132, E.133, I.134 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain C: L.156 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: V.165, H.166, S.167 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain C: A.132, E.133, I.134 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: Q.179, S.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.185 GOL.7: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GOL.12: 2 residues within 4Å: Chain C: Q.179, S.185 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.185 GOL.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Roy, S. et al., Molecular basis of mycobacterial lipid antigen presentation by CD1c and its recognition by alpha beta T cells. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-10-08

Peptides

T-cell receptor alpha: AC
T-cell receptor beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

C
B

B
A

D
A

T-cell receptor alpha

T-cell receptor beta

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