SMTL ID : 4onj.1

Crystal structure of the catalytic domain of ntDRM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

homo-dimer

Ligands

2 x SFG: SINEFUNGIN(Non-covalent)

SFG.1: 18 residues within 4Å: Chain A: N.209, S.210, F.211, F.237, S.238, G.239, I.240, G.242, V.260, E.261, K.262, N.266, N.287, D.288, V.289, S.314, P.315, L.337 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:N.209, A:F.211, A:F.237, A:G.239, A:I.240, A:G.242, A:E.261, A:K.262, A:S.263, A:N.266, A:D.288, A:V.289 pi-Stacking: A:F.237, A:F.237 SFG.2: 17 residues within 4Å: Chain B: N.209, S.210, F.211, F.237, S.238, G.239, G.242, E.261, K.262, S.263, N.266, N.287, D.288, V.289, S.314, P.315, L.337 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:P.315 Hydrogen bonds: B:F.211, B:F.237, B:G.242, B:K.262, B:S.263, B:N.266, B:D.288, B:V.289, B:S.314 pi-Stacking: B:F.237, B:F.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhong, X. et al., Molecular Mechanism of Action of Plant DRM De Novo DNA Methyltransferases. Cell(Cambridge,Mass.) (2014)

Release Date

2014-06-04

Peptides

DNA methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA methyltransferase