SMTL ID : 4oog.1

Crystal structure of yeast RNase III (Rnt1p) complexed with the product of dsRNA processing

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-4-2-mer

Ligands

8 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)

MG.1: 5 residues within 4Å: Chain C: D.49, E.124 Chain D: C.34 Chain H: C.1 Ligands: MG.2 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:D.49, C:E.124, H2O.1, H2O.1 MG.2: 6 residues within 4Å: Chain C: E.45, K.117, D.121, E.124 Chain H: C.1 Ligands: MG.1 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.45, C:E.124, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain C: E.42, E.45 Chain H: A.2 6 PLIP interactions: 2 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.42, C:E.45, H2O.1, H2O.1, H2O.1, H2O.1 MG.4: 1 residues within 4Å: Chain D: G.27 No protein-ligand interaction detected (PLIP) MG.5: 5 residues within 4Å: Chain D: C.1 Chain G: D.49, E.124 Chain H: C.34 Ligands: MG.6 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:D.49, G:E.124, H2O.5, H2O.5 MG.6: 6 residues within 4Å: Chain D: C.1 Chain G: E.45, K.117, D.121, E.124 Ligands: MG.5 4 PLIP interactions: 2 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.45, G:E.124, H2O.5, H2O.5 MG.7: 3 residues within 4Å: Chain D: A.2 Chain G: E.42, E.45 6 PLIP interactions: 2 interactions with chain G, 4 Ligand-Water interactions Metal complexes: G:E.42, G:E.45, H2O.5, H2O.5, H2O.5, H2O.5 MG.8: 1 residues within 4Å: Chain H: G.27 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, Y.H. et al., Structure of a Eukaryotic RNase III Postcleavage Complex Reveals a Double-Ruler Mechanism for Substrate Selection. Mol.Cell (2014)

Release Date

2014-04-16

Peptides

Ribonuclease 3: ABEF
Ribonuclease 3: CG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

C
C

G
C

Ribonuclease 3

Ribonuclease 3