SMTL ID : 4oos.1

Crystal structure of P domain from norovirus strain NSW0514

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: W.87, T.114, Q.115, T.116, N.159, T.160, K.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.114, A:T.114 Water bridges: A:T.116, A:T.116 EDO.2: 7 residues within 4Å: Chain A: F.29, F.36, Q.181, W.182, F.212, R.214, D.229 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:W.182, A:R.214, A:D.229, A:D.229 Water bridges: A:P.32, A:Q.181 EDO.3: 6 residues within 4Å: Chain A: L.51, L.52, G.53, T.55, I.96, L.100 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.55 Water bridges: A:G.53 EDO.4: 2 residues within 4Å: Chain A: D.68, N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.157 EDO.5: 6 residues within 4Å: Chain A: L.265, F.266, H.284, L.286, V.287, M.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.284, A:V.287 EDO.6: 2 residues within 4Å: Chain A: S.221, G.222 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.221, A:G.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, B.K. et al., Human noroviruses' fondness for histo-blood group antigens. J.Virol. (2015)

Release Date

2014-12-17

Peptides

VP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

VP1