SMTL ID : 4opm.3 (2 other biounits)

Crystal structure of a putative lipase (lip1) from Acinetobacter baumannii AYE at 1.70 A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x 15P: POLYETHYLENE GLYCOL (N=34)(Non-functional Binders)

15P.1: 46 residues within 4Å: Chain A: F.9, I.12, E.16, L.53, G.55, N.59, S.120, S.124, L.128, G.147, I.148, L.157, L.163, F.174, T.181, F.187, F.192, Q.196, Y.221, S.225, F.226, I.247, L.278 Chain B: F.9, I.12, E.16, L.53, N.59, S.120, S.124, L.128, G.147, L.157, L.163, F.174, L.177, T.181, F.187, F.192, L.214, L.217, L.229, I.247, H.274, M.275, L.278 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:N.59, A:S.120, A:S.124, A:S.225, B:R.62 Water bridges: A:L.53, A:R.62, A:L.121, B:L.53, B:N.59, B:L.121, B:S.124, B:G.147

9 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)

PE4.2: 2 residues within 4Å: Chain A: Q.165, Y.176 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.180 Water bridges: A:Y.176 PE4.3: 9 residues within 4Å: Chain A: T.161, Y.162, K.164, Q.165, L.167, S.169, K.170, D.173, Y.176 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.165, A:S.169 Water bridges: A:K.170 PE4.4: 3 residues within 4Å: Chain A: N.18, G.21, L.22 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.23 PE4.5: 7 residues within 4Å: Chain A: W.19, G.21, H.65, T.68, T.69 Chain B: F.183, N.184 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.69 PE4.6: 2 residues within 4Å: Chain A: Q.286, Q.287 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.287 Water bridges: A:Q.287, A:Q.287 PE4.7: 7 residues within 4Å: Chain A: K.28, D.31, I.32, T.33, I.85, V.86, S.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.33, A:T.33 Water bridges: A:D.31 PE4.8: 2 residues within 4Å: Chain B: S.26, K.28 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.26 Water bridges: B:K.28 PE4.9: 5 residues within 4Å: Chain B: N.18, G.21, L.22, Q.23 Ligands: PE4.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.23 Water bridges: B:G.40 PE4.10: 6 residues within 4Å: Chain A: F.183 Chain B: G.21, H.65, T.68, T.69 Ligands: PE4.9 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.68, B:T.68, A:F.183

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: I.285, V.289 Chain B: E.270, N.271 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.271 Water bridges: B:E.270, B:N.271, A:I.285

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.12: 4 residues within 4Å: Chain A: K.198 Chain B: G.1, A.2, D.3 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.2, B:D.3 Water bridges: B:N.4, A:K.198 Salt bridges: A:K.198 SO4.13: 2 residues within 4Å: Chain B: S.87, Q.88 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.88

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Joint Center for Structural Genomics (JCSG), Crystal structure of a putative lipase (lip1) from Acinetobacter baumannii AYE at 1.70 A resolution. To be published

Release Date

2014-02-19

Peptides

Lipase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lipase

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