SMTL ID : 4opt.1

Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x FDA: DIHYDROFLAVINE-ADENINE DINUCLEOTIDE(Non-covalent)

FDA.1: 35 residues within 4Å: Chain A: I.12, G.13, G.14, G.15, F.16, A.17, V.35, D.36, S.37, K.38, K.46, P.47, C.48, G.49, D.50, A.51, T.121, T.122, A.123, A.157, T.158, G.159, S.163, A.186, F.220, A.268, V.270, G.288, D.289, V.294, G.299, G.300, G.301, K.302 Ligands: GRG.2 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:A.186, A:A.268, A:V.270 Hydrogen bonds: A:G.14, A:F.16, A:A.17, A:S.37, A:K.46, A:G.49, A:A.51, A:A.51, A:A.123, A:S.163, A:S.163, A:D.289, A:G.301, A:K.302, A:K.302, A:G.303 Water bridges: A:K.38

1 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.2: 20 residues within 4Å: Chain A: A.51, V.52, S.53, A.55, I.77, V.90, N.91, G.92, E.93, G.94, F.95, L.203, Y.216, W.218, H.298, G.299, G.300, H.378, E.382 Ligands: FDA.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.51, A:I.77, A:V.90, A:L.203, A:W.218 Hydrogen bonds: A:S.53, A:S.53, A:N.91, A:E.93, A:E.382 Salt bridges: A:H.378

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: H.56, N.295, H.298, Y.341, K.344, S.381 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:N.295, A:Y.341, A:S.381 Water bridges: A:G.300, A:S.304 Salt bridges: A:H.56, A:H.298, A:K.344

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kung, Y. et al., Constructing tailored isoprenoid products by structure-guided modification of geranylgeranyl reductase. Structure (2014)

Release Date

2014-07-09

Peptides

Conserved Archaeal protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Conserved Archaeal protein