SMTL ID : 4ot1.1

Structural Basis for the Recognition of Human Cytomegalovirus Glycoprotein B by the Neutralizing Human Antibody SM5-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

hetero-oligomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: A.89, Q.92 No protein-ligand interaction detected (PLIP) EDO.2: 6 residues within 4Å: Chain B: Y.113, Y.114, H.115 Chain C: P.92, D.93, S.97 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:H.115, C:S.97 EDO.4: 7 residues within 4Å: Chain C: Q.38, K.46, G.58, P.60, F.63, G.82, D.83 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Q.38, C:K.46, C:K.46, C:G.82, C:D.83

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.3: 3 residues within 4Å: Chain C: N.53, K.54, R.55 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.53, C:R.55, C:R.55 Salt bridges: C:R.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spindler, N. et al., Structural basis for the recognition of human cytomegalovirus glycoprotein B by a neutralizing human antibody. Plos Pathog. (2014)

Release Date

2014-08-13

Peptides

Envelope glycoprotein B: A
SM5-1 Fab Heavy Chain: B
SM5-1 Fab Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Envelope glycoprotein B

SM5-1 Fab Heavy Chain

SM5-1 Fab Light Chain

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