SMTL ID : 4otf.1

Crystal structure of the kinase domain of Bruton's Tyrosine kinase with GDC0834

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.96, R.99, K.204 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.96, A:R.99 SO4.2: 2 residues within 4Å: Chain A: R.99, H.100 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.99, A:H.100 SO4.3: 5 residues within 4Å: Chain A: S.201, K.204, Y.226, P.228, H.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.226, A:H.229 Water bridges: A:L.230 Salt bridges: A:K.204, A:H.229

1 x 2VL: N-{3-[6-({4-[(2R)-1,4-dimethyl-3-oxopiperazin-2-yl]phenyl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-methylphenyl }-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide(Non-covalent)

2VL.4: 24 residues within 4Å: Chain A: K.15, E.16, L.17, T.19, G.20, Q.21, F.22, V.25, A.37, K.39, T.83, E.84, Y.85, M.86, A.87, G.89, D.130, N.135, L.137, D.148, L.151, S.152, V.155, Y.160 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.17, A:Q.21, A:F.22, A:V.25, A:V.25, A:L.151, A:V.155 Hydrogen bonds: A:M.86, A:M.86 Water bridges: A:G.20, A:N.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Young, W.B. et al., Potent and selective Bruton's tyrosine kinase inhibitors: Discovery of GDC-0834. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-01-28

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK