SMTL ID : 4otp.1

Crystal structure of the catalytic domain of the human RioK1 atypical protein kinase in complex with ADP/Mg2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: I.44, S.45, A.50, V.52, K.66, P.123, M.135, S.136, F.137, I.138, P.144, L.147, N.187, L.189, I.198, D.199 Ligands: MG.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.45, A:A.50, A:S.136, A:I.138 Water bridges: A:F.186, A:N.187 Salt bridges: A:K.66, A:K.66

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.187, D.199 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferreira-Cerca, S. et al., Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes. Nucleic Acids Res. (2014)

Release Date

2014-07-02

Peptides

Serine/threonine-protein kinase RIO1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase RIO1