SMTL ID : 4owj.1 (7 other biounits)

Crystal Structure of the Vibrio vulnificus Hemolysin/Cytolysin Beta-Trefoil Lectin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-heptamer

Ligands

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.28, A:H.41, A:N.45 GOL.2: 5 residues within 4Å: Chain A: W.89, G.91, D.92, K.130, P.131 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.89, A:G.91 GOL.3: 8 residues within 4Å: Chain B: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.20, B:D.20, B:K.28, B:H.41, B:N.45 GOL.4: 5 residues within 4Å: Chain B: W.89, G.91, D.92, K.130, P.131 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.91 Water bridges: B:G.91 GOL.5: 8 residues within 4Å: Chain C: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.20, C:D.20, C:K.28, C:H.41, C:N.45 GOL.6: 4 residues within 4Å: Chain C: W.89, G.91, D.92, P.131 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.91 GOL.7: 8 residues within 4Å: Chain D: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.28, D:H.41, D:N.45 Water bridges: D:N.45 GOL.8: 4 residues within 4Å: Chain D: W.89, G.91, D.92, P.131 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:G.91, D:G.91 GOL.9: 8 residues within 4Å: Chain E: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:D.20, E:K.28, E:H.41, E:N.45, E:N.45 GOL.10: 6 residues within 4Å: Chain E: W.89, G.91, D.92, W.129, K.130, P.131 1 PLIP interactions: 1 interactions with chain E Water bridges: E:G.91 GOL.11: 8 residues within 4Å: Chain F: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:D.20, F:K.28, F:H.41, F:N.45 Water bridges: F:N.45 GOL.12: 5 residues within 4Å: Chain F: W.89, G.91, D.92, K.130, P.131 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:G.91 Water bridges: F:G.91 GOL.13: 8 residues within 4Å: Chain G: D.20, V.21, Y.22, K.28, W.38, H.41, N.45, Q.46 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:D.20, G:K.28, G:H.41, G:N.45 Water bridges: G:N.45 GOL.14: 5 residues within 4Å: Chain G: W.89, G.91, D.92, K.130, P.131 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kaus, K. et al., Glycan Specificity of the Vibrio vulnificus Hemolysin Lectin Outlines Evolutionary History of Membrane Targeting by a Toxin Family. J.Mol.Biol. (2014)

Release Date

2014-05-28

Peptides

Cytolysin: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Cytolysin

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