SMTL ID : 4ox2.2 (1 other biounit)

I45T cytosolic phosphoenolpyruvate carboxykinase in complex with beta-sulfopyruvate and GTP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: T.291, D.310 Ligands: GTP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.291, H2O.3, H2O.3, H2O.9 MN.2: 6 residues within 4Å: Chain A: K.244, H.264, K.290, D.311 Ligands: GTP.3, SPV.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.264, A:D.311 MN.5: 2 residues within 4Å: Chain A: H.502, E.607 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.502, A:E.607, A:E.607, H2O.1

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.3: 24 residues within 4Å: Chain A: H.264, P.285, S.286, A.287, C.288, G.289, K.290, T.291, N.292, D.311, V.335, P.337, G.338, R.405, R.436, W.516, F.517, F.525, G.529, F.530, N.533 Ligands: MN.1, MN.2, SPV.4 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:A.287, A:C.288, A:G.289, A:K.290, A:T.291, A:N.292, A:N.292, A:P.337, A:R.436, A:F.530, A:N.533 Water bridges: A:V.335, A:R.405, A:R.436, A:R.436, A:W.516, A:P.528 Salt bridges: A:K.290, A:K.290, A:R.405 pi-Stacking: A:F.530, A:F.530 pi-Cation interactions: A:F.525

1 x SPV: SULFOPYRUVATE(Non-covalent)

SPV.4: 14 residues within 4Å: Chain A: R.87, G.236, G.237, K.243, K.244, H.264, S.286, D.311, F.333, R.405, A.467, F.485 Ligands: MN.2, GTP.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.237, A:S.286, A:R.405 Water bridges: A:R.87, A:K.243, A:R.405 Salt bridges: A:R.87, A:R.87, A:K.244, A:K.244, A:H.264, A:R.405, A:R.405

1 x NA: SODIUM ION(Non-functional Binders)

NA.6: 4 residues within 4Å: Chain A: G.64, V.65, L.79, N.208 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.65, A:L.79

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.7: 7 residues within 4Å: Chain A: L.153, W.260, W.314, M.315, K.316, R.324, E.424 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.424

1 x ETX: 2-ETHOXYETHANOL(Non-covalent)

ETX.8: 7 residues within 4Å: Chain A: A.447, S.449, W.450, L.508, P.509, K.510, I.511 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.447, A:I.511 Water bridges: A:K.510, A:K.510

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Adams, D.R. et al., Three rare diseases in one Sib pair: RAI1, PCK1, GRIN2B mutations associated with Smith-Magenis Syndrome, cytosolic PEPCK deficiency and NMDA receptor glutamate insensitivity. Mol.Genet.Metab. (2014)

Release Date

2014-06-11

Peptides

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Phosphoenolpyruvate carboxykinase, cytosolic [GTP]

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